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snpEnrichment (version 1.1-3)
SNPs enrichment analysis
Description
Implements classes and methods for large scale SNP enrichment analysis (e.g. SNPs associated with genes expression in a GWAS signal)
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Install
install.packages('snpEnrichment')
Monthly Downloads
84
Version
1.1-3
License
GPL (>= 2)
Maintainer
Mickael Canouil
Last Published
July 25th, 2013
Functions in snpEnrichment (1.1-3)
Search functions
initFiles
Initialize files for enrichment analysis
writeLD
Linkage Disequilibrium (LD) computation with PLINK
toyM2-dataset
Toy dataset with SNP data
plot-methods
Plot method (S4) for
Enrichment
object
transcript-dataset
Transcript information in order to check the CIS status for SNPs
snpEnrichment-internal
~ Internal: snpEnrichment objects and methods ~
reSample
Compute enrichment analysis on an
Enrichment
object
mclapply2
Parallel Versions of
lapply
with cores and memory control
snpEnrichment-package
~ Overview: SNPs enrichment analysis ~
is.enrichment
Is an Enrichment object
compareEnrichment
Compare enrichment analysis between two SNPs list
summary-methods
Summary method (S4)
Chromosome-class
Class
Chromosome
SNP-class
Class
"
SNP
"
GC
Full Garbage Collection
excludeSNP
Exclude SNPs from Enrichment analysis
is.chromosome
Is an Chromosome object
toyM1-dataset
Toy dataset with SNP data
readEnrichment
Read and create EnrichmentRatio object
Enrichment-class
Class
Enrichment