toyM1

toyM1-dataset

This data set gives an <code><links4class>Enrichment</links4class></code> object after,
<code><a href="/link/initFiles?package=snpEnrichment&version=1.1-3" rd-options="" data-mini-rdoc="snpEnrichment::initFiles">initFiles</a></code> and <code><a href="/link/readEnrichment?package=snpEnrichment&version=1.1-3" rd-options="" data-mini-rdoc="snpEnrichment::readEnrichment">readEnrichment</a></code> is ran.
The LD extend method used is "LD" (in <code><a href="/link/readEnrichment?package=snpEnrichment&version=1.1-3" rd-options="" data-mini-rdoc="snpEnrichment::readEnrichment">readEnrichment</a></code>: <code>extendMethod="ld"</code>).
Genome Build 37.3 (hg19).

datasets

Implements classes and methods for large scale SNP enrichment analysis (e.g. SNPs associated with genes expression in a GWAS signal)

Mickael Canouil

snpEnrichment

SNPs enrichment analysis

toyM1-dataset function

See class <code><links4class>Enrichment</links4class></code> for details about the format.

toyM1-dataset: Toy dataset with SNP data

Description

Usage

Arguments

format

See Also