Learn R Programming
⚠️There's a newer version (1.7.0) of this package.Take me there.

snpEnrichment (version 1.2-3)

SNPs enrichment analysis

Description

Implements classes and methods for large scale SNP enrichment analysis (e.g. SNPs associated with genes expression in a GWAS signal)

Copy Link

Version

Install

install.packages('snpEnrichment')

Monthly Downloads

6

Version

1.2-3

License

GPL (>= 2)

Maintainer

Mickael Canouil

Last Published

September 27th, 2013

Functions in snpEnrichment (1.2-3)

reSample

Compute enrichment analysis on an Enrichment object
is.enrichment

Is an Enrichment object
is.chromosome

Is an Chromosome object
snpEnrichment-package

~ Overview: SNPs enrichment analysis ~
GC

Full Garbage Collection
summary-methods

Summary method (S4)
Enrichment-class

Class Enrichment
snpEnrichment-internal

~ Internal: snpEnrichment objects and methods ~
compareEnrichment

Compare enrichment analysis between two SNPs list
Chromosome-class

Class Chromosome
toyEnrichmentM1-dataset

Toy dataset with SNP data
EnrichSNP-class

Class "EnrichSNP"
excludeSNP

Exclude SNPs from Enrichment analysis
transcript-dataset

Transcript information in order to check the CIS status for SNPs
toyEnrichmentM2-dataset

Toy dataset with SNP data
writeLD

Linkage Disequilibrium (LD) computation with PLINK
mclapply2

Parallel Versions of lapply with cores and memory control
readEnrichment

Read and create EnrichmentRatio object
plot-methods

Plot method (S4) for Enrichment object
initFiles

Initialize files for enrichment analysis