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sommer (version 1.1)
Solving Mixed Model Equations in R
Description
General mixed model equations solver, allowing the specification of variance covariance matrices of random effects and residual structures.
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Install
install.packages('sommer')
Monthly Downloads
4,995
Version
1.1
License
GPL-3
Maintainer
Giovanny CovarrubiasPazaran
Last Published
January 24th, 2016
Functions in sommer (1.1)
Search all functions
hdm
Half Diallel Matrix
EM
Expectation Maximization Algorithm
HDdata
half diallel data for corn hybrids
EMMA
Efficient Mixed Model Association Algorithm
sommer-package
Solving Mixed Model Equations in R
D.mat
Dominance relationship matrix
CPdata
Genotypic and Phenotypic data for a CP population (F1; cross between 2 highly heterozygote individuals; i.e. humans, fruit crops, bredding populations in recurrent selection).
A.mat
Additive relationship matrix
residuals.mmer
Residuals form a GLMM fitted with mmer
mmer2
Mixed Model Equations in R 2
wheatLines
wheat lines dataset
summary.mmer
summary form a GLMM fitted with mmer
fdr
False Discovery Rate calculation
E.mat
Epistatic relationship matrix
AI
Average Information Algorithm
mmer
Mixed Model Equations in R
cornHybrid
Corn crosses and markers
coef.mmer
coef form a GLMM fitted with mmer
adiag1
Binds arrays corner-to-corner
map.plot2
Creating a genetic map
anova.mmer
anova form a GLMM fitted with mmer
transp
Creating color with transparency
poe
Short poems from Latin America, and other places why not?
fitted.mmer
fitted form a GLMM fitted with mmer
plot.mmer
plot form a GLMM plot with mmer
score.calc
Score calculation for markers