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spaMM (version 1.1)

Mixed models, particularly spatial GLMMs

Description

Implements a collection of functions for inference in hierarchical generalized linear models (HGLMs), which include GLMMs but also non-Gaussian random effects (e.g. Beta Binomial). It was developed in particular for GLMMs with spatial correlations. Heteroskedasticity can further be fitted by a linear model. The algorithms are currently various Laplace approximations methods for ML or REML, in particular h-likelihood and penalized-likelihood methods.

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Version

Install

install.packages('spaMM')

Monthly Downloads

1,913

Version

1.1

License

CeCILL-2

Maintainer

Franois Rousset

Last Published

January 17th, 2014

Functions in spaMM (1.1)

summary.HLfit

Summary and print methods for fit and test results.
HLCor

Fits a (spatially) correlated mixed model, for given correlation parameters
options

spaMM options settings
Predictor

Interface for model formulas
Loaloa

Loa loa prevalence in North Cameroon, 1991-2001
corrHLfit

Fits a mixed model, typically a spatial GLMM.
spaMM

Inference in spatial GLMMs (and other non-spatial mixed models)
simulate.HLfit

Simulate realizations of a fitted correlated mixed model.
scotlip

Lip cancer in Scotland 1975 - 1980
fixedLRT

Likelihood ratio test of fixed effects.
update.HLfit

Updates an HLCor or HLfit fit
wafers

Data from a resistivity experiment for semiconductor materials.
blackcap

Genetic polymorphism in relation to migration in the blackcap
corMatern

Matern Correlation Structure as a corSpatial object
Matern.corr

Matern correlation function.
designL.from.Corr

Computation of square root of correlation matrix
predict

Prediction from a model fit.
arabidopsis

Arabidopsis genetic and climatic data
plot.HLfit

Model checking plots for mixed models
HLfit

Fit mixed models with given correlation matrix
spaMM-internal

Internal spaMM Functions