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spatstat (version 1.7-11)

Spatial Point Pattern analysis, model-fitting and simulation

Description

Spatial Point Pattern data analysis, modelling and simulation including multitype/marked points and spatial covariates

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Version

Install

install.packages('spatstat')

Monthly Downloads

16,015

Version

1.7-11

License

GPL version 2 or newer

Maintainer

Adrian Baddeley

Last Published

March 22nd, 2025

Functions in spatstat (1.7-11)

Gcross

Multitype Nearest Neighbour Distance Function (i-to-j)
Kcross

Multitype K Function (Cross-type)
Jdot

Multitype J Function (i-to-any)
Fest

Estimate the empty space function F
Gest

Nearest Neighbour Distance Function G
Jest

Estimate the J-function
Jcross

Multitype J Function (i-to-j)
ants

Harkness-Isham ants' nests data
betacells

Beta Ganglion Cells in Cat Retina
copper

Berman-Huntington points and lines data
anova.ppm

ANOVA for Fitted Point Process Models
affine.ppp

Apply Affine Transformation To Point Pattern
finpines

Pine saplings in Finland.
Strauss

The Strauss Point Process Model
as.mask

Pixel Image Approximation of a Window
ganglia

Beta Ganglion Cells in Cat Retina, Old Version
Saturated

Saturated Pairwise Interaction model
DiggleGratton

Diggle-Gratton model
gridweights

Compute Quadrature Weights Based on Grid Counts
bdist.pixels

Distance to Boundary of Window
affine

Apply Affine Transformation
Kdot

Multitype K Function (i-to-any)
pairsat.family

Saturated Pairwise Interaction Point Process Family
Kest.fft

K-function using FFT
Softcore

The Soft Core Point Process Model
Gdot

Multitype Nearest Neighbour Distance Function (i-to-any)
as.im

Convert to Pixel Image
plot.owin

Plot a Spatial Window
spatstat-internal

Internal spatstat functions
Kmeasure

Reduced Second Moment Measure
as.owin

Convert Data To Class owin
owin

Create a Window
compatible.fv

Test Whether Two Function Objects Are Compatible
Jmulti

Marked J Function
identify.ppp

Identify Points in a Point Pattern
LennardJones

The Lennard-Jones Potential
cells

Biological Cells Point Pattern
complement.owin

Take Complement of a Window
coef.ppm

Coefficients of Fitted Point Process Model
ord.family

Ord Interaction Process Family
nztrees

New Zealand Trees Point Pattern
eroded.areas

Areas of Morphological Erosions
intersect.owin

Intersection or Union of Two Windows
is.owin

Test Whether An Object Is A Window
is.marked

Test Whether Marks Are Present
Ord

Generic Ord Interaction model
bdist.points

Distance to Boundary of Window
applynbd

Apply Function to Every Neighbourhood in a Point Pattern
pcf.fv

Pair Correlation Function obtained from K Function
PairPiece

The Piecewise Constant Pairwise Interaction Point Process Model
crossdist

Pairwise distances between two different point patterns
distmap.owin

Distance Map of Window
distmap

Distance Map
plot.plotppm

Plot a plotppm Object Created by plot.ppm
letterR

Window in Shape of Letter R
Poisson

Poisson Point Process Model
is.ppp

Test Whether An Object Is A Point Pattern
amacrine

Hughes' Amacrine Cell Data
japanesepines

Japanese Pines Point Pattern
StraussHard

The Strauss / Hard Core Point Process Model
print.quad

Print a Quadrature Scheme
Pairwise

Generic Pairwise Interaction model
Kest

K-function
erode.owin

Erode a Window
humberside

Humberside Data on Childhood Leukaemia and Lymphoma
alltypes

Calculate Statistic for All Types in a Multitype Point Pattern
corners

Corners of a rectangle
affine.owin

Apply Affine Transformation To Window
cut.ppp

Convert Point Pattern Marks from Numeric to Factor
pairdist

Pairwise distances
gridcentres

Rectangular grid of points
owin.object

Class owin
quadratcount

Quadrat counting for a point pattern
eval.im

Evaluate Expression Involving Pixel Images
chorley

Chorley-Ribble Cancer Data
area.owin

Area of a Window
dirichlet.weights

Compute Quadrature Weights Based on Dirichlet Tessellation
as.ppp

Convert Data To Class ppp
diameter

Diameter of a Window Frame
ppm.object

Class of Fitted Point Process Models
ppp

Create a Point Pattern
hamster

Aherne's hamster tumour data
redwoodfull

California Redwoods Point Pattern (Entire Dataset)
plot.ppp

plot a Spatial Point Pattern
Gmulti

Marked Nearest Neighbour Distance Function
as.rectangle

Window Frame
pcf.fasp

Pair Correlation Function obtained from array of K functions
rmh.ppm

Simulate from a Fitted Point Process Model
is.marked.ppm

Test Whether A Point Process Model is Marked
is.ppm

Test Whether An Object Is A Fitted Point Process Model
fitted.ppm

Fitted Conditional Intensity for Point Process Model
inside.owin

Test Whether Points Are Inside A Window
data.ppm

Extract Original Data from a Fitted Point Process Model
rmpoint

Generate N Random Multitype Points
redwood

California Redwoods Point Pattern (Ripley's Subset)
envelope

Simulation envelopes of summary function
reduced.sample

Reduced Sample Estimator using Histogram Data
qqplot.ppm

Q-Q Plot of Residuals from Fitted Point Process Model
Geyer

Geyer's Saturation Point Process Model
Iest

Estimate the I-function
residualspaper

Data and Code From JRSS Discussion Paper on Residuals
demopat

Artificial Data Point Pattern
allstats

Calculate four standard summary functions of a point pattern.
OrdThresh

Ord's Interaction model
bounding.box

Bounding Box of a Window
compatible.im

Test Whether Two Pixel Images Are Compatible
eem

Exponential Energy Marks
is.im

Test Whether An Object Is A Pixel Image
MultiStraussHard

The Multitype/Hard Core Strauss Point Process Model
is.subset.owin

Determine Whether One Window is Contained In Another
suffstat

Sufficient Statistic of Point Process Model
diagnose.ppm

Diagnostic Plots for Fitted Point Process Model
longleaf

Longleaf Pines Point Pattern
bramblecanes

Hutchings' Bramble Canes data
reach

Interaction Distance of a Point Process
dummy.ppm

Extract Dummy Points Used to Fit a Point Process Model
rThomas

Simulate Thomas Process
rmh.default

Simulate Point Process Models using the Metropolis-Hastings Algorithm.
rmhstart

Determine Initial State for Metropolis-Hastings Simulation.
square

Square Window
pcf

Pair Correlation Function
plot.ppm

plot a Fitted Point Process Model
quad.ppm

Extract Quadrature Scheme Used to Fit a Point Process Model
spatstat-deprecated

Deprecated spatstat functions
expand.owin

Expand Window By Factor
im.object

Class of Images
Kmulti

Marked K-Function
rlabel

Random Re-Labelling of Point Pattern
Kinhom

Inhomogeneous K-function
distmap.ppp

Distance Map of Point Pattern
rMatClust

Simulate Matern Cluster Process
shift.owin

Apply Vector Translation To Window
split.ppp

Divide Point Pattern into Sub-patterns
runifpoint

Generate N Uniform Random Points
quadscheme

Generate a Quadrature Scheme from a Point Pattern
summary.ppp

Summary of a Point Pattern Dataset
nndist

Nearest neighbour distances
rescue.rectangle

Convert Window Back To Rectangle
im

Create a Pixel Image Object
stratrand

Stratified random point pattern
markcorr

Mark Correlation Function
rotate

Rotate
shift.ppp

Apply Vector Translation To Point Pattern
km.rs

Kaplan-Meier and Reduced Sample Estimator using Histograms
spokes

Spokes pattern of dummy points
predict.ppm

Prediction from a Fitted Point Process Model
residuals.ppm

Residuals for Fitted Point Process Model
shift

Apply Vector Translation
lansing

Lansing Woods Point Pattern
subset.im

Extract Subset of Image
rSSI

Simple Sequential Inhibition
MultiStrauss

The Multitype Strauss Point Process Model
print.ppm

Print a Fitted Point Process Model
default.dummy

Generate a Default Pattern of Dummy Points
fv.object

Data Frames of Function Values
print.owin

Print Brief Details of a Spatial Window
subset.fasp

Extract Subset of Function Array
spatstat.options

Internal Options in Spatstat Package
swedishpines

Swedish Pines Point Pattern
summary.ppm

Summarizing a Fitted Point Process Model
ripras

Estimate window from points alone
spatstat

The Spatstat Package
print.ppp

Print Brief Details of a Point Pattern Dataset
union.quad

Union of Data and Dummy Points
concatxy

Concatenate x,y Coordinate Vectors
rMaternII

Simulate Matern Model II
plot.quad

plot a Spatial Quadrature Scheme
simdat

Simulated Point Pattern
rpoint

Generate N Random Points
pcf.ppp

Pair Correlation Function of Point Pattern
spruces

Spruces Point Pattern
plot.fv

Plot Function Valuesn
setcov

Set Covariance of a Window
ppp.object

Class of Point Patterns
nearest.raster.point

Find Pixel Nearest to a Given Point
is.marked.ppp

Test Whether A Point Pattern is Marked
rotate.ppp

Rotate a Point Pattern
rNeymanScott

Simulate Neyman-Scott Process
ppm

Fit Point Process Model to Data
summary.im

Summarizing a Pixel Image
ksmooth.ppp

Kernel Smoothed Intensity of Point Pattern
eval.fv

Evaluate Expression Involving Functions
rotate.owin

Rotate a Window
rmhcontrol

Set Control Parameters for Metropolis-Hastings Algorithm.
rmh

Simulate point patterns using the Metropolis-Hastings algorithm.
scanpp

Read Point Pattern From Data File
kaplan.meier

Kaplan-Meier Estimator using Histogram Data
lurking

Lurking variable plot
plot.fasp

Plot a Function Array
rtoro

Random Toroidal Shift of Point Pattern
centroid.owin

Centroid of a window
plot.im

Plot a Pixel Image
setmarks

Set or Reset the Marks in a Point Pattern
pairwise.family

Pairwise Interaction Process Family
plot.splitppp

Plot a List of Point Patterns
summary.quad

Summarizing a Quadrature Scheme
rmhmodel

Define Point Process Model for Metropolis-Hastings Simulation.
rmpoispp

Generate Multitype Poisson Point Pattern
harmonic

Basis for Harmonic Functions
fasp.object

Function Arrays for Spatial Patterns
summary.owin

Summary of a Spatial Window
unmark

Remove Marks from a Marked Point Pattern
shift.im

Apply Vector Translation To Pixel Image
quad.object

Class of Quadrature Schemes
print.im

Print Brief Details of an Image
update.ppm

Update a Fitted Point Process Model
subset.fv

Extract Subset of Function Values
rMaternI

Simulate Matern Model I
subset.ppp

Extract or Replace Subset of Point Pattern
rpoispp

Generate Poisson Point Pattern
raster.x

Cartesian Coordinates for a Pixel Raster
superimpose

Superimpose Several Point Patterns