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splicegear (version 1.44.0)

splicegear

Description

A set of tools to work with alternative splicing

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Version

Version

1.44.0

License

LGPL

Maintainer

Laurent Gautier

Last Published

February 15th, 2017

Functions in splicegear (1.44.0)

as.data.frame.SpliceExprSet

SpliceExprSet object to data.frame converter
plot.SpliceSites

plot a SpliceSites object
getRelSignStrength

functions to perform SPLICE
grid.expand.gp

convenience functions for grid
spliceset

Example data for splicegear
SpliceSitesGenomic-class

Class "SpliceSitesGenomic"
SpliceExprSet-class

Class "SpliceExprSet"
Probes-class

Class "Probes"
grid.plot.Probes

Plot splicegear objects
sort.SpliceExprSet

A function to sort a SpliceExprSet
SpliceSites-class

Class "SpliceSites"
plot.SpliceSitesGenomic

Function to plot SpliceSitesGenomic objects
isProbeOnSpliceSite

Check the presence of probes on certain exons
barplot.SpliceSites

barplot for SpliceSites
buildSpliceSites

Functions to query PALSdb
matchprobes2Probes

create Probes object from matchprobes results
plot.SpliceExprSet

plot a SpliceExprSet
split.SpliceSites

split an instance of SpliceSites