spm12r (version 2.8.3)

spm12_realign.deprecated: SPM12 Realign (Estimate and Reslice)

Description

Performs SPM12 realignment estimation and reslicing on an Image

Usage

spm12_realign.deprecated(
  filename,
  fwhm = 5,
  register_to = c("first", "mean"),
  reslice = c("all", "2:n", "all+mean", "mean"),
  prefix = "r",
  add_spm_dir = TRUE,
  spmdir = spm_dir(verbose = verbose, install_dir = install_dir),
  clean = TRUE,
  verbose = TRUE,
  outdir = NULL,
  install_dir = NULL,
  ...
)

Arguments

filename

Files to be realigned and resliced

fwhm

Full-Width Half Max to smooth

register_to

Should the files be registered to the first or the mean

reslice

Options for reslicing all - all images in filename, 2:n - all images in filename 2:length(filename), all+mean - all images and the mean, mean - mean only

prefix

Prefix to append to front of image filename

add_spm_dir

Add SPM12 directory from this package

spmdir

SPM dir to add, will use package default directory

clean

Remove scripts from temporary directory after running

verbose

Print diagnostic messages

outdir

Directory to copy results. If full filename given, then results will be in dirname(filename)

install_dir

directory to download SPM12

...

Arguments passed to run_spm12_script

Value

Result from run_matlab_script