Usage
pRP(data, cl, num.perm, logged = TRUE, na.rm = FALSE, gene.names = NULL, plot = FALSE, rand = NULL, sum = FALSE)
Arguments
cl
vector, class labels of the samples
num.perm
integer, the number of permutations used in the
calculation of the null density. The default value is
100.
logged
boolean, whether the data is logged or not. The default
value is TRUE.
na.rm
boolean, whether missing values are to be replaced by the
gene-wise mean of the non-missing values and used in
computing rank. The default value is FALSE.
gene.names
the gene name to be assigned to the estimated percentage
of false positive predictions. The default value is
NULL.
plot
boolean, whether to plot the estimated percentage of false
positive predictions against the rank of each gene. The
default value is FALSE.
rand
number, the seed for the random number generator if specified.
The default value is NULL.
sum
boolean, whether to perform a rank sum analysis. The default
value is NULL.