sprint v1.0.7
Monthly downloads
Simple Parallel R INTerface
SPRINT (Simple Parallel R INTerface) is a parallel
framework for R. It provides a High Performance Computing (HPC)
harness which allows R scripts to run on HPC clusters. SPRINT
contains a library of selected R functions that have been
parallelized. Functions are named after the original R function
with the added prefix 'p', i.e. the parallel version of cor()
in SPRINT is called pcor(). Call to the parallel R functions
are included directly in standard R scripts.
SPRINT contains functions for correlation (pcor), partitioning around medoids (ppam),
apply (papply), permutation testing (pmaxT), bootstrapping (pboot), random forest (prandomForest),
rank product (pRP) and hamming distance (pstringdistmatrix).
Functions in sprint
| Name | Description | |
| About SPRINT | Overview of SPRINT | |
| pmaxT | Ajusted p-values for step down multiple testing | |
| pRPadvance | pRPadvance | |
| papply | Parallel Apply | |
| ppam | Parallel Partitioning Around Medoids | |
| pcombine | pcombine | |
| reset.rng | reset.rng | |
| pterminate | SPRINT close | |
| pRP | Parallel Rank Product | |
| ptest | SPRINT Installation Test | |
| pRSadvance | pRSadvance | |
| pRS | pRS | |
| prandomForest | Parallel random forest generation | |
| init.rng | init.rng | |
| pcor | Parallel Correlation | |
| pboot | Parallel Bootstrapping | |
| pstringdistmatrix | Parallel compute hamming distance between strings | |
| No Results! | ||
Last month downloads
Details
| Date | 2014-09-24 |
| Copyright | University of Edinburgh |
| Contact | University of Edinburgh SPRINT Team |
| SystemRequirements | MPI(>= 2.0) |
| License | GPL (>= 3) |
| URL | http://www.r-sprint.org |
| Repository | CRAN |
| Packaged | 2014-09-29 12:12:34 UTC; eilidhtroup |
| Date/Publication | 2014-09-29 18:03:02 |
| NeedsCompilation | yes |
| OS_type | unix |
| depends | base (>= 2.9.2) , ff (>= 2.1-1) , R (>= 2.9.2) , randomForest , rlecuyer |
| suggests | Biostrings , cluster , golubEsets , Matrix , multtest , RankProd , RUnit , ShortRead , SparseM , stringdist |
| imports | boot , e1071 |
| Contributors | University of Edinburgh SPRINT Team |
Include our badge in your README
[](http://www.rdocumentation.org/packages/sprint)