sprint v1.0.7

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by Eilidh Troup

Simple Parallel R INTerface

SPRINT (Simple Parallel R INTerface) is a parallel framework for R. It provides a High Performance Computing (HPC) harness which allows R scripts to run on HPC clusters. SPRINT contains a library of selected R functions that have been parallelized. Functions are named after the original R function with the added prefix 'p', i.e. the parallel version of cor() in SPRINT is called pcor(). Call to the parallel R functions are included directly in standard R scripts. SPRINT contains functions for correlation (pcor), partitioning around medoids (ppam), apply (papply), permutation testing (pmaxT), bootstrapping (pboot), random forest (prandomForest), rank product (pRP) and hamming distance (pstringdistmatrix).

Functions in sprint

Name Description
About SPRINT Overview of SPRINT
pmaxT Ajusted p-values for step down multiple testing
pRPadvance pRPadvance
papply Parallel Apply
ppam Parallel Partitioning Around Medoids
pcombine pcombine
reset.rng reset.rng
pterminate SPRINT close
pRP Parallel Rank Product
ptest SPRINT Installation Test
pRSadvance pRSadvance
pRS pRS
prandomForest Parallel random forest generation
init.rng init.rng
pcor Parallel Correlation
pboot Parallel Bootstrapping
pstringdistmatrix Parallel compute hamming distance between strings
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Details

Date 2014-09-24
Copyright University of Edinburgh
Contact University of Edinburgh SPRINT Team
SystemRequirements MPI(>= 2.0)
License GPL (>= 3)
URL http://www.r-sprint.org
Repository CRAN
Packaged 2014-09-29 12:12:34 UTC; eilidhtroup
Date/Publication 2014-09-29 18:03:02
NeedsCompilation yes
OS_type unix

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