sprint v1.0.7
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Simple Parallel R INTerface
SPRINT (Simple Parallel R INTerface) is a parallel
framework for R. It provides a High Performance Computing (HPC)
harness which allows R scripts to run on HPC clusters. SPRINT
contains a library of selected R functions that have been
parallelized. Functions are named after the original R function
with the added prefix 'p', i.e. the parallel version of cor()
in SPRINT is called pcor(). Call to the parallel R functions
are included directly in standard R scripts.
SPRINT contains functions for correlation (pcor), partitioning around medoids (ppam),
apply (papply), permutation testing (pmaxT), bootstrapping (pboot), random forest (prandomForest),
rank product (pRP) and hamming distance (pstringdistmatrix).
Functions in sprint
Name | Description | |
About SPRINT | Overview of SPRINT | |
pmaxT | Ajusted p-values for step down multiple testing | |
pRPadvance | pRPadvance | |
papply | Parallel Apply | |
ppam | Parallel Partitioning Around Medoids | |
pcombine | pcombine | |
reset.rng | reset.rng | |
pterminate | SPRINT close | |
pRP | Parallel Rank Product | |
ptest | SPRINT Installation Test | |
pRSadvance | pRSadvance | |
pRS | pRS | |
prandomForest | Parallel random forest generation | |
init.rng | init.rng | |
pcor | Parallel Correlation | |
pboot | Parallel Bootstrapping | |
pstringdistmatrix | Parallel compute hamming distance between strings | |
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Details
Date | 2014-09-24 |
Copyright | University of Edinburgh |
Contact | University of Edinburgh SPRINT Team |
SystemRequirements | MPI(>= 2.0) |
License | GPL (>= 3) |
URL | http://www.r-sprint.org |
Repository | CRAN |
Packaged | 2014-09-29 12:12:34 UTC; eilidhtroup |
Date/Publication | 2014-09-29 18:03:02 |
NeedsCompilation | yes |
OS_type | unix |
depends | base (>= 2.9.2) , ff (>= 2.1-1) , R (>= 2.9.2) , randomForest , rlecuyer |
suggests | Biostrings , cluster , golubEsets , Matrix , multtest , RankProd , RUnit , ShortRead , SparseM , stringdist |
imports | boot , e1071 |
Contributors | University of Edinburgh SPRINT Team |
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