pstringdistmatrix

a: R object (target); will be converted by 'as.character'.

b: R object (source); will be converted by 'as.character'. Must be the same as argument a in this version of the software.

Method for distance calculation - only option 'h' for hamming distance is supported.

method

Results will be stored here as binary data

filename

Not used in the hamming distance measure.

weight

maxDist

Not used by SPRINT, please see the SPRINT user guide.

ncores

Calculates the hamming distance matrix between strings.


utilities

interface

SPRINT (Simple Parallel R INTerface) is a parallel
framework for R. It provides a High Performance Computing (HPC)
harness which allows R scripts to run on HPC clusters. SPRINT
contains a library of selected R functions that have been
parallelized. Functions are named after the original R function
with the added prefix 'p', i.e. the parallel version of cor()
in SPRINT is called pcor(). Call to the parallel R functions
are included directly in standard R scripts.
SPRINT contains functions for correlation (pcor), partitioning around medoids (ppam),
apply (papply), permutation testing (pmaxT), bootstrapping (pboot), random forest (prandomForest),
rank product (pRP) and hamming distance (pstringdistmatrix).

pstringdistmatrix: Parallel compute hamming distance between strings

Description

Usage

Arguments

Details

See Also