stacomiR v0.5.4.3

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Fish Migration Monitoring

Graphical outputs and treatment for a database of fish pass monitoring. It is a part of the 'STACOMI' open source project developed in France by the French Office for Biodiversity (OFB) institute to centralize data obtained by fish pass monitoring. This version is available in French and English. See <http://stacomir.r-forge.r-project.org/> for more information on 'STACOMI'.

Functions in stacomiR

Name Description
calcule,report_mig-method Transforms migration per period to daily migrations, and performs the conversion from weights to number is data are stored as weights (glass eel).
charge,ref_textbox-method Loading method for ReTextBox referential objects
charge,ref_coe-method loads the coefficients for the period defined in class
charge,report_mig_env-method charge method for report_mig_env class
calcule,report_ge_weight-method Calcule method for report_ge_weight
charge,ref_taxa-method Loading method for ref_taxa referential objects
charge,report_mig_interannual-method loading method for report_mig_interannual class
charge,ref_choice-method Loading method for Rechoice referential objects
charge Generic method to load referentials
calcule,report_mig_mult-method #' Transforms migration per period to daily migrations, and performs the conversion from weights to number is data are stored as weights (glass eel). This calculation is performed in a loop for all dc.
calcule,report_mig_interannual-method calcule method for report_mig_interannual
barplot,report_annual-method barplot method for object report_annual-class
calcule,report_species-method calcule method for report_species
calcule,report_silver_eel-method Calculate individual silver eel parameters.
charge,ref_checkbox-method Loading method for ref_checkbox referential objects
calcule Generic method for calculations
calcmig A data frame containing the default connection arguments. The program will use a file installed in c:/program files/stacomi but if not found will switch to this default value
charge,ref_year-method Loading method for ref_year referential objects
charge_complement,ref_parqual-method Loads an additional dataset this method is loaded to obtain the possible values of a qualitative parameter. Here data only contains one line
charge,ref_parquan-method Loading method for Reparquan referential objects
charge_with_filter,ref_par-method Loading method for Repar referential objects searching only those parameters existing for a DC, a Taxa, and a stage
charge_complement Generic method to load additional data
charge,ref_stage-method Loading method for ref_stage referential objects
charge,report_sea_age-method Loads data and check that all choices in the graphical interface have been made.
calcule,report_mig_char-method Computes data to a standard format for the summary and plot methods.
charge,report_sample_char-method charge method for report_sample_char class
calcule,report_sample_char-method Calculation for report_sample_char
charge,report_annual-method charge method for report_annual class
choice,ref_choice-method Choice method for Rechoice referential objects
charge,report_env-method charge method for report_env class
charge,ref_list-method Loading method for refliste referential objects
charge,ref_env-method Loading method for ref_env referential object
calcule,report_sea_age-method Split data according to the limits set in the limit1hm, and limit2hm arguments of the report_sea_age-class.
calcule,report_mig_env-method Calculations for migration in the class report_mig_env-class
charge,ref_df-method Loading method for DF referential objects
charge,ref_dc-method Method to load the counting devices of the control station
charge,ref_par-method Loading method for Repar referential objects
choice_c,ref_textbox-method Choice_c method for ReTextBox referential objects
choice,ref_horodate-method Graphical interface
charge,ref_parqual-method Loading method for Reparqual referential objects
choice,ref_stage-method Choice method for ref_stage referential objects
choice_c,ref_year-method choice_c method for ref_year referential from the command line
choice_c,ref_timestep_daily-method choice_c method for class ref_timestep_daily
choice_c,report_annual-method command line interface for report_annual-class
charge,report_mig_mult-method charge method for report_mig_mult
choice,ref_taxa-method Choice method for reftaxa referential objects with only one taxa selected
choice,ref_dc-method Graphical method to choose a fishway through the interface
charge,report_dc-method charge method for report_dc
choice_c,ref_stage-method choice_c method for ref_stage
charge_with_filter,ref_parqual-method Loading method for Reparqual referential objects searching only those parameters existing for a DC, a Taxon, and a stage
charge,report_ope-method charge method for report_ope
charge,report_df-method charge method for report_df
choice,ref_year-method choice method for ref_year referential
choice_c,report_mig_mult-method command line interface for report_mig_mult class
choice,ref_list-method Choice method for ref_list referential objects
choice,ref_timestep_daily-method Method to select timesteps from the graphical interface
charge,report_ge_weight-method charge method for report_ge_weight class
colortable Builds a table with colors to merge with a dataframe for later use in ggplot. An initial check will be done on the name of the color vector. A data frame is built. It contains a column color which is a factor. The factor order match the order of the vector (not the alphabetical order of the colors).
choice_c Generic method for manual choice using the command line
connect,report_mig-method connect method for report_mig
connect,report_mig_char-method connect method for report_mig_char
choice_c,report_dc-method command line interface for report_dc class
choice_c,report_species-method command line interface for report_species-class
choice_c,ref_taxa-method choice_c method for ref_taxa
choice_c,report_df-method command line interface for report_df class
connect,report_annual-method connect method for report_annual class this method performs the sum over the year attention this function does not count subsamples.
charge,report_mig-method Loads additional data on migration control operations, df (fishway) dc (counting device).
charge_with_filter,ref_parquan-method Loading method for Reparquan referential objects searching only those parameters existing for a DC, a Taxon, and a stage
choice,ref_env-method Choice method for ref_env referential object
choice_c,ref_choice-method Choice_c method for refchoix referential objects
choice_c,ref_horodate-method Command line
choice_c,ref_env-method Command line interface to select a monitoring station
choice Generic method for choice (using the gwidget graphical interface)
fun_date_extraction This function extracts temporal characteristics from a dataframe
fun_report_mig_interannual statistics per time period
currentstart_date,ref_timestep-method Gets the starting date of a time step for an object of class ref_timestep-class
choice,ref_df-method Graphical method to choose a fishway through the interface
choice_c,report_mig_env-method command line interface for report_env class
funbarchart1DC Handler for barchart for report_df class from the graphical interface
current_end_date Generic method for getting the ending date for current time step
charge,report_silver_eel-method charge method for report_silver_eel class
charge_with_filter,ref_stage-method Loading method for ref_stage referential objects searching only those stages existing for a DC and a Taxon
choice_c,report_mig_interannual-method command line interface for report_mig_interannual class
chargecomplement-methods Methods for Function chargecomplement
choice_c,report_sample_char-method command line interface for report_sample_char class
choice,ref_parqual-method Choice method for ref_parqual referential objects, internal use
choice_c,report_sea_age-method command line interface for report_sea_age class
connect,report_dc-method connect method for report_dc
charge,report_species-method charge method for report_species
choice_c,ref_dc-method Command line interface to select a counting device
choice,ref_par-method Choice method for ref_par referential objects
connect,report_df-method connect method for report_df
choice_c,report_mig-method command line interface for report_mig class
charge,report_mig_char-method charge method for report_mig_char
charge_with_filter,ref_taxa-method Loading method for ref_taxa referential objects searching only taxa existing for a DC
choice_c,ref_df-method Command line interface to choose a fishway
choice_c,report_silver_eel-method command line interface for report_silver_eel class
charge_with_filter Generic method to load referentials, with filters from the parent object in the database
choice_c,report_mig_char-method command line interface for report_mig_char class
funout this function uses gfile, edits a text with info and changing colors
funplotreport_sea_age funplotreport_sea_age
funbarchart1DF Handler for barchart for report_df class from the graphical interface
connect,report_ope-method connect method for report_ope
connect,report_mig_mult-method connect method for report_mig_mult
choicemult,ref_taxa-method Multiple Choice method for reftaxa referential objects, the graphical interface is built to allow for multiple choices. See load for method in the command line.
connect,report_env-method connect method for report_env class
funtablereport_silver_eel table function
connect,report_ge_weight-method connect method for report_Poids_moyen
choicemult,ref_timestep-method Graphical interface for multiple choice method for PasdeTemps (used in report_mig_mult)
fun_weight_conversion returns a table where weights and number are calculated from number and weights respectively performs a query to collect the conversion coefficients
fun_write_monthly This writes monthly data in t_reportmensuel_mens table
chargecsv chargecsv loads the informations stored in c:/program files/stacomi/calcmig.csv file
choicemult,ref_horodate-method Multiple Choice method for ref_horodate referential objects, to put together with notebook widgets
funchartDC Handler function to plot calendar like graph, internal use
envir_stacomi Environment where most objects from the package are stored and then loaded by the charge method
fun_aggreg_for_plot returns a table where all components within the list calcdata are aggregated and formatted for plot
funtable function to print and save statistics in .csv and .html formats for report_mig and report_mig_mult class
choicemult Generic method for multiple choice (using the gwidget notebook for multiple choice)
end_date Generic method for getting the final date
currentstart_date Generic method for getting the beginning date for current time step
fun_char_spe function used to remove special non utf8 character which cause the gtk interface to crash
end_date,ref_timestep-method Gets the final horodate for an object of class ref_timestep-class
getvalue,ref_period-method Returns the POSIXt value of a given name
choicemult,ref_par-method Multiple Choice method for ref_par referential objects, internal use
choice,ref_checkbox-method Choice method for ref_checkbox referential objects
coef_durif Silvering index coefficients from Caroline Durif (2009) to predict silvering stage from morphological parameters
getvalue Generic method getvalue
connect,report_sample_char-method connect method for report_sample_char
funboxplotreport_sample_char Boxplots for ggplot2
get_step_label,ref_timestep-method Gets the string value of time step
connect,report_sea_age-method connect method for report_sea_age
funtableDC FuntableDC create a table output for report_dc class
funtableDF Table output for report_df class
funtablereport_ge_weight Internal handler for reg, class report_ge_weight-class.
funchartDF Handler function to plot calendar like graph, internal use
h_report_envgraph h_report_envgraph Internal method
getdbname Retrieves the dbname from a connection using "baseODBC"
funstat_daily function to create daily statistics
funstat Function to calculate statistics per month
funtablereport_sample_char table function
getdateDebut Generic method the get starting date
createmessage Generic method to forward outputs
fundensityreport_sample_char fundensityreport_sample_char uses ggplot2 to draw density plots
funtablereport_sea_age table function
current_end_date,ref_timestep-method Gets the ending date of a time step for an object of class ref_timestep-class
h_report_ge_weight handler function used by the main interface
h_report_mig_mult_graph handler for plot method in report_mig_mult class
h_report_mig_multcalc handler for calculations
houtDF handler to print the command line
interface_report_annual interface for report_annual class
h_report_size handler function used by the main interface
hbmmCEgraph internal method for graphical interface
houtDC handler to print the command line
plot,report_annual,missing-method Plot method for report_annual
model Generic for prediction
hbmmCEcalc Internal handler function
interface_report_dc interface for report_dc class
interface_report_sea_age An interface that calls the object to build the user interface
fun_report_mig_mult Calculate daily migration by simple repartition
choice_c,ref_list-method Choice_c method for ref_list referential objects
choice,ref_textbox-method Choice method for ReTextBox referential objects
h_report_silver handler function used by the main interface
h_report_dc handler function used by the main interface
fun_report_mig_mult_overlaps Function to calculate daily migration using overlaps functions
plot,report_mig_mult,missing-method Plots of various type for report_mig_mult
interface_report_sample_char An interface that calls the object to build the user interface
choice,ref_timestep-method Method to select timesteps from the graphical interface
choice_c,ref_par-method Command line interface to select a parameter
funbarchartDC Function to create a barchart (lattice) corresponding to the periods
hgraph_report_mig_interannual Plot of all interannual from top to bottom
h_report_mig_multgraph3 handler
plot,report_sample_char,missing-method Plots of various type for reportcarlot
h_report_sea_age handler function used by the main interface
h_report_mig_multgraph2 handler du calcul h_report_miggraph2
h_report_sample_char handler function used by the main interface
choice_c,report_env-method command line interface for report_env class
h_report_df handler function used by the main interface
funbarchartDF Handler for barchart for report_df class from the graphical interface
choice_c,report_ge_weight-method command line interface for report_ge_weight-class
hgraph_report_mig_interannual2 Plot of daily migrations
getnocurrent_step Generic method to get current time step
getnocurrent_step,ref_timestep-method Gets the current time step of an object of class ref_timestep-class
hplot Internal handler for reg, class report_ge_weight-class.
funplotreport_silver_eel funplotreport_silver_eel
ref_choice-class Class "ref_choice"
get_year Generic method to get the years
r_mig_dc Counting device operation for the video recording (Arzal dam, Vilaine, France).
h_report_mig_char handler function used by the main interface
funpointreport_sample_char Point graph from ggplot
choicemult,ref_choice-method Multiple Choice method for ref_choice referential objects, to put together with notebook widgets
r_dc Counting Device (DC) operation from 2000 to 2015 at the Arzal dam (Vilaine, France)
hplotbilesp handler for plot internal use
interface_report_df interface for report_df class
r_df Overview of the fishway operation at Arzal in (Vilaine France).
r_mig_df Fishway operation for the vertical slot fishway (Arzal dam, Vilaine, France).
ref_list-class Class "ref_list"
interface_report_silver_eel An interface that calls the object to build the user interface
getdateDebut,ref_timestep-method Returns the starting date as character
ref_taxa-class Class "ref_taxa"
ref_coe-class Class "ref_coe"
choicemult,ref_dc-method choicemult, selection method for ref_dc allowing to select several DC
ref_textbox-class ref_textbox referencial class
hTablereport_mig handler for summary function, internal use calls functions funstat and funtable to build summary tables in html and csv files
interface_report_env Interface for class conditionEnv
h_report_mig_env handler function used by the main interface
ref_par-class Class "ref_par"
h_report_miggraph handler for h_report_miggraph
h_report_species handler function used by the main interface
hcalc Internal handler for reg, class report_ge_weight-class.
hbarplotreport_annual Barplot handler
connect,report_mig_env-method connect method for report_mig_env class
choicemult,ref_parqual-method Multiple Choice method for ref_parqual referential objects internal use
interface_report_species Interface for report_species class
choicemult,ref_stage-method Multiple Choice method for ref_stage referential objects
plot,report_dc,ANY-method Different plots for report_dc
h_report_migcalc handler for calculations report_mig
hexp Internal handler for reg, class report_ge_weight-class.
connect,report_mig_interannual-method connect method for report_mig_interannual
plot,report_df,ANY-method Different plots for report_df
hTablereport_mig_mult handler function table
hgraph_report_mig_interannual3 Step plot with different years displayed on the same graph. One year can be highlighted against the others
setasqualitative Generic method to transform quantitative par into a qualitative one
print,report_mig-method Method to print the command line of the object
print,report_df-method Method to print the command line of the object
report_mig_mult-class Migration reports for multiple DC / species / stages
print,report_sea_age-method Method to print the command line of the object
hgraph_report_mig_interannual4 Plot comparing the migration to the migration computed for all years available in the daily migration table. This function plots comparisons for periods of 1 week, 2 weeks, month
report_mig_interannual-class Class "report_mig_interannual"
print,report_silver_eel-method Method to print the command line of the object
h_report_mig handler function used by the main interface
summary,report_mig-method summary for report_mig calls functions funstat and funtable to create migration overviews and generate csv and html output in the user data directory
h_report_mig_annual handler function used by the main interface
r_mig_interannual_vichy Seasonality of salmon migration at the Vichy counting station (Loire)
setref_horodate,ref_horodate-method Method to set the Horodate
interface_report_mig Interface for report_mig class, internal use, this function is called by a handler in the main graphical interface
model,report_ge_weight-method model method for report_ge_weight' this method uses samples collected over the season to model the variation in weight of glass eel or yellow eels.
connect,report_silver_eel-method connect method for report_silver_eel
hplotreport_annual plot handler
interface_report_ge_weight interface for report_ge_weight class
hreg Internal handler for reg, class report_ge_weight-class.
plot,report_mig_env,missing-method Plot method for report_mig_env
load_stacomi Internal function, tests the connection and if it works loads the stacomi interface
summary,report_mig_char-method summary for report_mig_char
validity_year Validity check for ref_year
h_report_miggraph2 handler for h_report_miggraph2
connect,report_species-method connect method for report_species
h_report_migwrite handler h_report_migwrite Allows the saving of daily and monthly counts in the database
h_report_ope handler function used by the main interface
validity_ref_horodate Validity check for ref_horodate
fun_stage_durif Function to calculate the stages from Durif
fun_table_per_dis functions called in DF and DC
r_mig_mult_ope Counting operations for three different counting device in Arzal (Vilaine, France)
funboxDC function used for some lattice graph
r_mig_mult Anguilla migration at the Arzal station (report_mig_mult-class)
hbmCplotqual handler for plot
h_report_pigment_stages handler function used by the main interface
hbmCplotcrossed handler for plot
ref_timestep-class Class "ref_timestep"
ref_horodate-class Class ref_horodate
r_mig_ope An object of class report_ope-class with data loaded
ref_env-class Class "ref_env"
funboxDF Internal use, rectangles to describe the DF work for report_df class, graphical interface handler
plot,report_mig_interannual,missing-method Plot method for report_mig_interannual
report_ope-class Report on operations
houtreport_mig handler to print the command line
progress_bar Progress bar using a gtkdialog, the progress bar is assigned in envir_stacomi This progress bar has a button to close.
quitte function used to clean the objects within the group and the graphs and also elements remaining in the envir_stacomi environment
houtreport_mig_mult handler to print the command line
stacomiR-package stacomiR
stacomi_installed Test that the program is installed.
report_sample_char-class Class "report_sample_char"
fungraph Function for report_mig graphs including numbers DF DC operations
hsummaryreport_migInterannuelle Summary handler internal method
hsummarybilesp handler for summary report_species, internal use
ref_timestepChar-class Class "ref_timestepChar"
r_mig Video counting of thin lipped mullet (Liza ramada) in 2015 in the Vilaine (France)
r_mig_char Qualitative and quantitative parameters describing Salmon migration at Decize (Loire)
get_step_label Generic method to get the string value of time step
fungraph_glasseel Graph function for glass eel migration. Differs from fungraph as it does not draw the ggplot graph for month
interface_report_mig_interannual interface for report_mig_interannual class
get_year,ref_timestep-method Gets the year or a vector of years corresponding to the timestep ("ref_timestep") object
plot,report_mig,ANY-method Plots of various type for report_mig.
plot,report_mig_char,missing-method plot method for report_mig_char
print,report_dc-method Method to print the command line of the object
plot,report_species,missing-method Plot method for report_species
r_ann Annual migration of yellow and silver eel for three fishways / counting devices at the Arzal dam (data from 1995 to 2016)
r_mig_env An object of class report_mig_env with data loaded
summary,report_sample_char-method summary for report_sample_char
summary,report_sea_age-method summary for report_sea_age
r_mig_interannual Daily glass eel and elver migration from 1984 to 2016 in the Sevre Niortaise
vector_to_listsql Transforms a vector into a string called within an sql command e.g. c('A','B','C') => in ('A','B','C')
graphdate function used for some lattice graphs with dates
r_silver Silver eel migration in the Somme
r_ann_adour Annual migration of salmon in the Adour and tributaries
write_database,report_ge_weight-method Function to write data to the stacomi database for report_ge_weight-class
interface_report_mig_mult graphical interface for report_mig_mult class
ref_checkbox-class ref_checkbox referencial class
r_sample_char Size of yellow and glass eel at the Arzal dam (Vilaine, France) in the fishway and main eel trapping ladder.
r_seaa An object of class report_sea_age with data loaded
ref_period-class Class "ref_period" referential class
ref_parqual-class Class "ref_parqual"
ref_stage-class Class "ref_stage"
report_sea_age-class Class "report_sea_age"
split_per_day Create a dataframe suitable for charts per 24h and day
h_report_dfdc handler function used by the main interface
ref_timestep_daily-class Class "ref_timestep_daily"
h_report_mig_interannual handler function used by the main interface
stacomi Function that loads the loginwindow, tests connection, and then destroys the window
summary,report_silver_eel-method summary for report_silver_eel
h_report_mig_mult handler function used by the main interface
hbilespcalc handler for calculation
report_silver_eel-class Class "report_silver_eel"
ref_parquan-class Class "ref_parquan"
graphe-methods Methods for Function graphe
summary,report_species-method summary for report_species generate csv and html output in the user data directory
h_report_env handler function used by the main interface
hbmCplotquan handler for plot
report_env-class class report_env simple output of one or several environmental conditions...
supprime,report_sea_age-method supprime method for report_mig_interannual class
supprime Generic method to delete entires from the database
hbmCstat This handler calls the generic method stat
ref_year-class Year reference class
report_df-class Report on fishway operation
hbmCcalc handler for report_mig_char
write_database Generic method write_database
summary,report_dc-method summary for report_dc, write csv and html output, and prints summary statistics
setasqualitative,report_mig_char-method Turns a quantitative parameter into qualitative
report_mig-class Migration report for one DC, one species and one stage
report_ge_weight-class Trend of wet weight in glass eel
summary,report_df-method summary for report_df, write csv and html output, and prints summary statistics
set_starting_date Generic method to set the starting date
xtable,report_annual-method xtable function for report_annual-class create an xtable objet but also assigns an add.to.column argument in envir_stacomi, for later use by the print.xtable method.
write_database,report_mig-method Command line method to write the daily and monthly counts to the t_bilanmigrationjournalier_bjo table
write_database,report_sea_age-method Command line method to write the characteristic "sea age" (car_par_code='A124') into the tj_caracteristiquelot_car table in the user's scheme
hgraph_report_mig_interannual5 Function displaying comparison similar to hgraph_report_mig_interannual4 but using pointrange and geom_bar This function plots comparisons for periods of 1 week, 2 weeks, month
hgraph_report_mig_interannual7 This function creates a cumulated area plot to highlight seasonal trends in migration. Data are calculated by 2 weeks period then centered and reduced
plot,report_env,missing-method Plot method for report_env
plot,report_ge_weight,missing-method Plot method for report_ge_weight'
hxtablereport_annual xtable handler
plot,report_sea_age,missing-method Plots of various type for report_sea_age
plot,report_silver_eel,missing-method Plots of various type for report_silver_eel
print,report_mig_mult-method Method to print the command line of the object
interface_graphique Program launch, this function launches the GwidgetRgtk graphical interface to stacomi. To be able to run, some widgets (win, grouptotal, group...) are assigned in the user environment .GlobalEnv.
print,report_sample_char-method Method to print the command line of the object
interface_report_mig_char interface for report_migPar class
ref_df-class Class "ref_df"
report_annual-class Class "report_annual"
report_mig_char-class Migration report along with quantitative and qualitative characteristics
ref_dc-class Class "ref_dc"
report_mig_env-class Class "report_mig_env"
report_species-class Counts of number per taxa/stages
summary,report_mig_interannual-method summary for report_mig_interannual provides summary statistics for the latest year (if silent=TRUE), or the year selected in the interface, if silent=FALSE. Mean, min and max are historical statistics with the selected year excluded from the historical dataset.
summary,report_mig_mult-method summary for report_mig_mult calls functions funstat and funtable to create migration overviews and generate csv and html output in the user data directory
report_dc-class Class "report_dc" report du fonctionnement du dispositif de comptage
supprime,ref_coe-method supprime method for "ref_coe" class
supprime,report_mig_interannual-method supprime method for report_mig_interannual class
xtable,report_mig_char-method xtable function for report_mig_char-class create an xtable objet to be later used by the print.xtable method.
r_mig_mult_dc Counting device operation for three different counting device in Arzal (Vilaine, France)
r_gew Wet weight of glass eel from the trapping ladder (Arzal, Vilaine France)
r_mig_mult_df Fishway operation at the Arzal Dam (Vilaine France) (3 Fishways in 2011)
interface_report_mig_env interface for report_migConditionEnv class
set_starting_date,ref_timestep-method Sets starting date from a character
r_env An object of class report_env with data loaded
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Date 2020-03-04
License GPL (>= 2)
URL http://stacomir.r-forge.r-project.org/
BugReports https://github.com/MarionLegrandLogrami/stacomiR/issues
Collate 'create_generic.R' 'data.R' 'fun_table_per_dis.R' 'fun_write_monthly.R' 'fungraph.R' 'fungraph_glasseel.R' 'funstat.R' 'funstat_daily.R' 'funtable.R' 'interface_report_annual.R' 'interface_report_dc.R' 'interface_report_df.R' 'interface_report_env.R' 'interface_report_ge_weight.R' 'interface_report_mig.R' 'interface_report_mig_char.R' 'interface_report_mig_env.R' 'interface_report_mig_interannual.R' 'interface_report_mig_mult.R' 'interface_report_sample_char.R' 'interface_report_sea_age.R' 'interface_report_silver_eel.R' 'interface_report_species.R' 'ref_checkbox.R' 'ref_choice.R' 'ref_coe.R' 'ref_dc.R' 'ref_df.R' 'ref_env.R' 'ref_horodate.R' 'ref_list.R' 'ref_par.R' 'ref_parqual.R' 'ref_parquan.R' 'ref_period.R' 'ref_stage.R' 'ref_taxa.R' 'ref_textbox.R' 'ref_timestep.R' 'ref_timestep_daily.R' 'ref_year.R' 'report_annual.R' 'report_dc.R' 'report_df.R' 'utilities.R' 'report_env.R' 'report_ge_weight.R' 'report_ope.R' 'report_mig.R' 'report_sample_char.R' 'report_mig_char.R' 'report_mig_mult.R' 'report_mig_env.R' 'report_mig_interannual.R' 'report_sea_age.R' 'report_silver_eel.R' 'report_species.R' 'setAs.R' 'stacomi.R'
LazyLoad yes
LazyData true
RoxygenNote 6.1.0.9000
NeedsCompilation no
VignetteBuilder knitr
Repository CRAN
Repository/R-Forge/Project stacomir
Repository/R-Forge/Revision 561
Repository/R-Forge/DateTimeStamp 2020-03-13 07:39:38
Date/Publication 2020-03-18 15:20:13 UTC
Packaged 2020-03-13 07:50:42 UTC; rforge

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