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streambugs (version 1.4)

Parametric Ordinary Differential Equations Model of Growth, Death, and Respiration of Macroinvertebrate and Algae Taxa

Description

Numerically solve and plot solutions of a parametric ordinary differential equations model of growth, death, and respiration of macroinvertebrate and algae taxa dependent on pre-defined environmental factors. The model (version 1.0) is introduced in Schuwirth, N. and Reichert, P., (2013) . This package includes model extensions and the core functions introduced and used in Schuwirth, N. et al. (2016) , Kattwinkel, M. et al. (2016) , Mondy, C. P., and Schuwirth, N. (2017) , and Paillex, A. et al. (2017) .

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Version

Install

install.packages('streambugs')

Monthly Downloads

180

Version

1.4

License

GPL-3

Maintainer

Nele Schuwirth

Last Published

November 29th, 2023

Functions in streambugs (1.4)

plot.streambugs

Plot the results of streambugs ODE run
decode.statevarnames

Decode the streambugs ODE state variable names
foodweb.plot

Plot the streambugs "foodweb" graph.
streambugs.example.model.extended

Set-up the streambugs extended model
streambugs.example.model.toy

Set-up the streambugs toy model
run.streambugs

Run the streambugs ODE model
streambugs.get.sys.def

Get system definition of the streambugs ODE model
streambugs.write.sys.def

Write system definition of the streambugs ODE model
streambugs-package

Simulator of development of macroinvertebrate and algae taxa
construct.statevariables

Construct the streambugs ODE state variable names
count.feeding.links

Count feeding links between taxa in streambugs ODE.