streambugs (version 1.4)

streambugs.example.model.extended: Set-up the streambugs extended model

Description

Set-up state variables, parameters, input, and output times of the streambugs extended model. All these are defined and read from .dat files The model is ready to run with run.streambugs.

Usage

streambugs.example.model.extended()

Value

List with:

$name

name of the example

$y.names

list with names of state variables as returned by the decode.statevarnames function

$times, $par, $inp:

corresponding input parameters of the run.streambugs function

Model syntax

See "docs/Streambugs_syntax.pdf" file in the package installation folder: system.file("docs", "Streambugs_syntax.pdf", package="streambugs").

Examples

model <- streambugs.example.model.extended()
# display values of microhabitat tolerance values for Lumbriculidae taxa
model$par[grepl("^Lumbriculidae_microhabtolval", names(model$par))]