Filter edges on network.
Filter edges in SIMoNeNet
Convert aliases
Generic function for objects of class SIMoNeNet
Convert to distance graph from STRINGNet
Generic function for objects of class DEGeneExpr.
Export WGCNANet
Print function for object of class MultiDEGeneExpr
Generic function for objects of class FactorNetworks
Function to create an object of class WGCNANet
Convert stringgaussnet network into igraph
Add Cytoscape mapping for SIMoNeNet
Add default values for Cytoscape styles
addShortPathSTRINGNetMappings
Add Cytoscape mapping for ShortPathSTRINGNet
Export SIMoNeNet
Export STRINGNet
FilterEdges.FactorNetworks
Filter edges in FactorNetworks
Generic function for objects of class MultiDEGeneExpr
Generic function for objects of class WGCNANet
Compare levels of FactorNetworks
Apply layout to a network in Cytoscape
Pick SIMoNe parameters
Plot SIMoNeNet
Compare gaussian networks
Add Cytoscape mapping for WGCNANet
Get gene annotations
Add network style to Cytoscape
Generic function for objects of class ShortPathSTRINGNet.
ShortPathSTRINGNet.default
Function to create object of class ShortPathSTRINGNet
Add MultiNetworks to Cytoscape
Function to create an object of class STRINGNet
Plot WGCNANet
export.ShortPathSTRINGNet
Export ShortPathSTRINGNet
Check Cytoscape running
Pick WGCNA parameters
75 DE genes analysis results from LIMMA.
Save Cytoscape session
Reset Cytoscape session
Add Cytoscape mapping for STRINGNet
Print function for object of class ShortPathSTRINGNet.
Print function for object of class WGCNANet.
Print function for object of class MultiNetworks
Compute STRING combined scores
summary.ShortPathSTRINGNet
Summary function for object of class ShortPathSTRINGNet
Merge gaussian networks edges
Summary function for object of class WGCNANet
Get shortest paths between given nodes in STRING network.
Compute similarities for WGCNA
Function to create object of class SIMoneNet
Summary function for object of class STRINGNet
Creation of DEGenesExpr object.
Select interaction sources in STRINGNet object
Infer SIMoNe network from expression data
FilterEdges.ShortPathSTRINGNet
Filter edges in ShortPathSTRINGNet
Gert maRt datasets
Summary function for object of class SIMoNeNet
Function to create an object of class FactorNetworks
Print function for object of class DEGeneExpr.
Map attributes for toCytoscape()
Add default mappings for Cytoscape styles
Converts from igraph to Cytoscape object
Generic function to export network objects from package stringgaussnet.
Generic function for objects of class MultiNetworks
Add network to Cytoscape
Find shortest pathways between selected nodes
Get STRING network from gene identifiers
Merge FactorNetworks edges
Print function for object of class STRINGNet.
Print function for object of class SIMoNeNet.
Generic function for objects of class STRINGNet.
Data expression of the 75 DE genes identified by LIMMA in SpA sample data.
Function to create an object of class MultiDEGeneExpr
addFactorGraphsToCytoscape
Add FactorNetworks object to Cytoscape
Plot FactorNetworks
Print function for object of class FactorNetworks
Apply style to a network in Cytoscape
Infer WGCNA network from expression data
Function to create an object of class MultiNetworks
Samples description for SpA example data.