computeSimilarities

DEGeneExpr

This function computes spearman's rhos from an expression data matrix and transforms it into similarity score. This function is used in getWGCNANet().

A toolbox for a construction of protein-protein interaction networks through the 'STRING' application programming interface, and an inference of Gaussian networks through 'SIMoNe' and 'WGCNA' approach, from DE genes analysis results and expression data. Additional functions are provided to import automatically networks into an active 'Cytoscape' session.

computeSimilarities: Compute similarities for WGCNA

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