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stringgaussnet (version 1.1)

summary.ShortPathSTRINGNet:

Summary function for object of class ShortPathSTRINGNet

Description

This function displays specifically a summary object of class ShortPathSTRINGNet, with summary of distance and other edge attributes.

Usage

"summary"(object, ...)

Arguments

object

Object of class ShortPathSTRINGNet

...

Additional parameters from generic summary function

See Also

ShortPathSTRINGNet, ShortPathSTRINGNet.default, getShortestPaths, print.ShortPathSTRINGNet, export.ShortPathSTRINGNet

Examples

Run this code
data(SpADataExpression)
data(SpADEGenes)
SpAData<-DEGeneExpr(t(SpADataExpression),SpADEGenes)

# SpASTRINGNet<-getSTRINGNet(SpAData)
# Can be longer.

# SpASTRINGNet<-getSTRINGNet(SpAData,AddAnnotations=FALSE)
# print(SpASTRINGNet,5)
# summary(SpASTRINGNet)
# PPISpASTRINGNet<-selectInteractionTypes(SpASTRINGNet,
#	c("coexpression","experimental","knowledge"),0.9)

# shortPathSpANet<-getShortestPaths(PPISpASTRINGNet)
# shortPathSpANet<-FilterEdges(shortPathSpANet,2.2)
# print(shortPathSpANet,5)
# summary(shortPathSpANet)

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