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strvalidator (version 1.5.2)

Process Control and Internal Validation of Forensic STR Kits

Description

An open source platform for validation and process control. Tools to analyse data from internal validation of forensic short tandem repeat (STR) kits are provided. The tools are developed to provide the necessary data to conform with guidelines for internal validation issued by the European Network of Forensic Science Institutes (ENFSI) DNA Working Group, and the Scientific Working Group on DNA Analysis Methods (SWGDAM). A front-end graphical user interface is provided. More information about each function can be found in the respective help documentation.

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Version

Install

install.packages('strvalidator')

Monthly Downloads

274

Version

1.5.2

License

GPL-2

Maintainer

Oskar Hansson

Last Published

August 31st, 2015

Functions in strvalidator (1.5.2)

addData

Adds New Data Columns to a Data Frame
addData_gui

Add Data
calculateConcordance

Calculate Concordance.
calculateOverlap_gui

Calculate Bins Overlap
cropData_gui

Crop Or Replace
export_gui

Export
getKit

Get Kit
calculateAT6

Calculate Analytical Threshold
checkSubset

Check Subset
calculateStutter_gui

Calculate Stutter
plotDropout_gui

Plot Drop-out Events
generateEPG_gui

Generate EPG
columns_gui

Column Actions
editData_gui

Edit or View Data Frames
filterProfile_gui

Filter Profile
ref2

SGMPlus example data
calculateHeight

Calculate Peak Height.
calculateHeterozygous_gui

Calculate Heterozygous Loci
calculateHeight_gui

Calculate Peak Height
calculatePullup

Calculate Spectral Pull-up
calculatePullup_gui

Calculate Spectral Pull-up
calculateResultType_gui

Calculate Result Type
heightToPeak

Height To Peak.
plotAT_gui

Plot Analytical Threshold
ref11

ESX17 Positive Control Profile
readBinsFile

Read Bins file
addMarker

Add Missing Markers.
calculatePeaks_gui

Calculate Peaks
combineBinsAndPanels

Combine Bins And Panels Files.
addMarker_gui

Add Missing Markers
import

Import Data.
guessProfile_gui

Guess Profile
plotDistribution_gui

Plot Distribution
ref1

ESX17 Positive Control Profile
checkDataset

Check Dataset
compact

Compact Profile
set1

Typing data in 'GeneMapper' format
plotBalance_gui

Plot Balance
ref3

ESX17 example data for dropout analysis.
ggsave_gui

Save Image
strValidator-package

Simplifies internal validation of forensic STR typing kits
trim

Trim Data
slim

Slim Data Frames
tableCapillary

Table Capillary
tablePrecision_gui

Table Precision
calculateAT6_gui

Calculate Analytical Threshold
calculateDropout

Calculate Drop-out Events
calculateOL_gui

Analyse Off-ladder Alleles
columns

Column Actions
detectKit

Detect Kit
filterProfile

Filter Profile
guessProfile

Guess Profile
plotPeaks_gui

Plot Peaks
plotPullup_gui

Plot Pull-up
ref52

ESX17 example data for mixture analysis.
calculateBalance

Calculate Balance
addColor

Add Color Information.
plotStutter_gui

Plot Stutter
plotResultType_gui

Plot Result Type
addSize

Add Size Information.
calculateCapillary_gui

Calculate Capillary Balance
set5

ESX17 example data for mixture analysis.
tableStutter

Table Stutter
calculateBalance_gui

Calculate Balance
set2

SGMPlus example data
calculateMixture

Calculate Mixture.
calculatePeaks

Calculate Peaks
getDb

Get Allele Frequency Database
plotCapillary_gui

Plot Capillary Balance
readPanelsFile

Read Panels File
ref51

ESX17 example data for mixture analysis.
sortMarker

Sort Markers
tablePrecision

Calculate Precision
tableBalance_gui

Table Balance
strvalidator

Graphical User Interface For The STR-validator Package
trim_gui

Trim Data
calculateAT

Calculate Analytical Threshold
calculateResultType

Calculate Result Type
import_gui

Import Data
generateEPG

Generate EPG
combine_gui

Combine Datasets
ref4

ESX17 example data for dropout analysis.
set4

ESX17 example data for dropout analysis.
addDye_gui

Add Dye Information
calculateConcordance_gui

Calculate Concordance
calculateOverlap

Calculate Bins Overlap
calculateOL

Analyse Off-ladder Alleles
makeKit_gui

Make Kit
plotKit_gui

Plot Kit Marker Ranges
plotPrecision_gui

Plot Precision
set3

ESX17 example data for dropout analysis.
slim_gui

Slim Data Frames
tableBalance

Table Balance
tableCapillary_gui

Table Capillary
addSize_gui

Add Size Information
calculateDropout_gui

Calculate Dropout Events
calculateMixture_gui

Calculate Mixture
calculateAT_gui

Calculate Analytical Threshold
checkSubset_gui

Check Subset
colNames

Column Names
calculateStutter

Calculate Stutter
modelDropout_gui

Model And Plot Drop-out Events
blockAT

Block And Prepare Data To Analyze Analytical Threshold
calculateCapillary

Calculate Capillary Balance
calculateHeterozygous

Calculate Heterozygous Loci
export

Export
listObjects

List Objects
saveObject

Save Object
tableStutter_gui

Table Stutter