Usage
blockAT(data, ref = NULL, block.height = TRUE, height = 500,
block.sample = TRUE, per.dye = TRUE, range.sample = 20,
block.ils = TRUE, range.ils = 10, ignore.case = TRUE, word = FALSE,
debug = FALSE)
Arguments
data
a data frame containing at least 'Dye.Sample.Peak',
'Sample.File.Name', 'Marker', 'Allele', 'Height', and 'Data.Point'.
ref
a data frame containing at least
'Sample.Name', 'Marker', 'Allele'.
block.height
logical to indicate if high peaks should be blocked.
height
integer for global lower peak height threshold for peaks
to be excluded from the analysis. Active if 'block.peak=TRUE.
block.sample
logical to indicate if sample allelic peaks should be blocked.
per.dye
logical TRUE if sample peaks should be blocked per dye channel.
FALSE if sample peaks should be blocked globally across dye channels.
range.sample
integer to specify the blocking range in (+/-) data points.
Active if block.sample=TRUE.
block.ils
logical to indicate if internal lane standard peaks should be blocked.
range.ils
integer to specify the blocking range in (+/-) data points.
Active if block.ils=TRUE.
ignore.case
logical to indicate if sample matching should ignore case.
word
logical to indicate if word boundaries should be added before sample matching.
debug
logical to indicate if debug information should be printed.