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subSeq (version 1.2.2)

Subsampling of high-throughput sequencing count data

Description

Subsampling of high throughput sequencing count data for use in experiment design and analysis.

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Version

Version

1.2.2

License

MIT + file LICENSE

Issues

6

Pull Requests

0

Stars

19

Forks

2

Maintainer

Andrew J Bass

Last Published

February 15th, 2017

Functions in subSeq (1.2.2)

combineSubsamples

combine multiple subsamples objects
subsample

Subsample reads and perform statistical testing on each sample
plot.subsamples

plot metrics as a function of subsampled read depth
getSeed

Extract the global random seed from a subsamples object
hammer

ExpressionSet results from Hammer et al 2010
summary.subsamples

calculate summary statistics for each subsampled depth in a subsamples object
ss

Subsampling results using the hammer dataset
plot.summary.subsamples

plot metrics as a function of subsampled read depth
generateSubsampledMatrix

Generate the read matrix corresponding to a particular level