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subSeq (version 1.2.2)
Subsampling of high-throughput sequencing count data
Description
Subsampling of high throughput sequencing count data for use in experiment design and analysis.
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Version
1.2.2
1.2.0
1.0.1
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Version
1.2.2
License
MIT + file LICENSE
Issues
6
Pull Requests
0
Stars
19
Forks
2
Repository
http://github.com/StoreyLab/subSeq
Maintainer
Andrew J Bass
Last Published
January 1st, 1970
Functions in subSeq (1.2.2)
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combineSubsamples
combine multiple subsamples objects
subsample
Subsample reads and perform statistical testing on each sample
plot.subsamples
plot metrics as a function of subsampled read depth
getSeed
Extract the global random seed from a subsamples object
hammer
ExpressionSet results from Hammer et al 2010
summary.subsamples
calculate summary statistics for each subsampled depth in a subsamples object
ss
Subsampling results using the hammer dataset
plot.summary.subsamples
plot metrics as a function of subsampled read depth
generateSubsampledMatrix
Generate the read matrix corresponding to a particular level