ExpressionSet results from Hammer et al 2010

An ExpressionSet containing the results of the Hammer et al 2010 RNA-Seq study on the nervous system of rats (Hammer et al 2010). This dataset is used in the examples and vignette for the subSeq package.

This was downloaded from the ReCount database of analysis-ready RNA-Seq datasets (Frazee et al 2011).

Hammer, P., Banck, M. S., Amberg, R., Wang, C., Petznick, G., Luo, S., Khrebtukova, I., Schroth, G. P., Beyerlein, P., and Beutler, A. S. (2010). mRNA-seq with agnostic splice site discovery for nervous system transcriptomics tested in chronic pain. Genome research, 20(6), 847-860. http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2877581/

Frazee, A. C., Langmead, B., and Leek, J. T. (2011). ReCount: a multi-experiment resource of analysis-ready RNA-seq gene count datasets. BMC Bioinformatics, 12, 449. http://bowtie-bio.sourceforge.net/recount/

  • hammer
Documentation reproduced from package subSeq, version 1.2.2, License: MIT + file LICENSE

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