survival v3.1-11

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Survival Analysis

Contains the core survival analysis routines, including definition of Surv objects, Kaplan-Meier and Aalen-Johansen (multi-state) curves, Cox models, and parametric accelerated failure time models.

Functions in survival

Name Description
Surv Create a Survival Object
agreg.fit Cox model fitting functions
aareg Aalen's additive regression model for censored data
bladder Bladder Cancer Recurrences
Surv-methods Methods for Surv objects
aml Acute Myelogenous Leukemia survival data
aeqSurv Adjudicate near ties in a Surv object
attrassign Create new-style "assign" attribute
basehaz Alias for the survfit function
anova.coxph Analysis of Deviance for a Cox model.
cgd0 Chronic Granulotomous Disease data
concordancefit Compute the concordance
cox.zph Test the Proportional Hazards Assumption of a Cox Regression
colon Chemotherapy for Stage B/C colon cancer
cipoisson Confidence limits for the Poisson
clogit Conditional logistic regression
concordance Compute the concordance statistic for data or a model
cluster Identify clusters.
flchain Assay of serum free light chain for 7874 subjects.
finegray Create data for a Fine-Gray model
diabetic Ddiabetic retinopathy
coxph.control Ancillary arguments for controlling coxph fits
dsurvreg Distributions available in survreg.
lines.survfit Add Lines or Points to a Survival Plot
levels.Surv Return the states of a multi-state Surv object
frailty Random effects terms
coxph Fit Proportional Hazards Regression Model
cch Fits proportional hazards regression model to case-cohort data
coxph.object Proportional Hazards Regression Object
cgd Chronic Granulotamous Disease data
model.matrix.coxph Model.matrix method for coxph models
coxph.detail Details of a Cox Model Fit
myeloid Acute myeloid leukemia
lung NCCTG Lung Cancer Data
print.summary.coxph Print method for summary.coxph objects
coxph.wtest Compute a quadratic form
heart Stanford Heart Transplant data
mgus Monoclonal gammopathy data
nafld Non-alcohol fatty liver disease
logLik.coxph logLik method for a Cox model
print.summary.survexp Print Survexp Summary
nwtco Data from the National Wilm's Tumor Study
strata Identify Stratification Variables
quantile.survfit Quantiles from a survfit object
ratetable Rate table structure
ovarian Ovarian Cancer Survival Data
print.summary.survfit Print Survfit Summary
neardate Find the index of the closest value in data set 2, for each entry in data set one.
coxsurv.fit A direct interface to the `computational engine' of survfit.coxph
ratetableDate Convert date objects to ratetable form
print.survfit Print a Short Summary of a Survival Curve
logan Data from the 1972-78 GSS data used by Logan
is.ratetable Verify that an object is of class ratetable.
predict.coxph Predictions for a Cox model
plot.survfit Plot method for survfit objects
survexp.fit Compute Expected Survival
residuals.coxph Calculate Residuals for a `coxph' Fit
summary.aareg Summarize an aareg fit
survexp Compute Expected Survival
residuals.survreg Compute Residuals for `survreg' Objects
mgus2 Monoclonal gammopathy data
pbc Mayo Clinic Primary Biliary Cirrhosis Data
kidney Kidney catheter data
rats Rat treatment data from Mantel et al
plot.aareg Plot an aareg object.
rhDNase rhDNASE data set
ridge Ridge regression
solder Data from a soldering experiment
survfit.matrix Create Aalen-Johansen estimates of multi-state survival from a matrix of hazards.
model.frame.coxph Model.frame method for coxph objects
predict.survreg Predicted Values for a `survreg' Object
pbcseq Mayo Clinic Primary Biliary Cirrhosis, sequential data
retinopathy Diabetic Retinopathy
plot.cox.zph Graphical Test of Proportional Hazards
survfit.formula Compute a Survival Curve for Censored Data
udca Data from a trial of usrodeoxycholic acid
summary.survexp Summary function for a survexp object
summary.survfit Summary of a Survival Curve
survival-internal Internal survival functions
survregDtest Verify a survreg distribution
survobrien O'Brien's Test for Association of a Single Variable with Survival
survdiff Test Survival Curve Differences
survcheck Checks of a survival data set
survfitcoxph.fit A direct interface to the `computational engine' of survfit.coxph
tcut Factors for person-year calculations
survreg.object Parametric Survival Model Object
untangle.specials Help Process the `specials' Argument of the `terms' Function.
rats2 Rat data from Gail et al.
survreg Regression for a Parametric Survival Model
xtfrm.Surv Sorting order for Surv objects
veteran Veterans' Administration Lung Cancer study
pspline Smoothing splines using a pspline basis
reliability Reliability data sets
print.aareg Print an aareg object
tmerge Time based merge for survival data
summary.coxph Summary method for Cox models
summary.pyears Summary function for pyears objecs
yates Population prediction
pyears Person Years
survConcordance Compute a concordance measure.
statefig Draw a state space figure.
stanford2 More Stanford Heart Transplant data
yates_setup Method for adding new models to the yates function.
survfit Create survival curves
survexp.object Expected Survival Curve Object
survSplit Split a survival data set at specified times
survfit.object Survival Curve Object
ratetables Census Data Sets for the Expected Survival and Person Years Functions
survfit.coxph Compute a Survival Curve from a Cox model
survreg.control Package options for survreg and coxph
survreg.distributions Parametric Survival Distributions
tobin Tobin's Tobit data
survfit0 Convert the format of a survfit object.
vcov.coxph Variance-covariance matrix
uspop2 Projected US Population
transplant Liver transplant waiting list
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Vignettes of survival

Name
adjcurve.Rnw
approximate.Rnw
compete.Rnw
concordance.Rnw
multi.Rnw
other.Rnw
population.Rnw
refer.bib
splines.Rnw
survival.Rnw
tiedtimes.Rnw
timedep.Rnw
validate.Rnw
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Details

Priority recommended
LazyData Yes
LazyLoad Yes
ByteCompile Yes
License LGPL (>= 2)
URL https://github.com/therneau/survival
NeedsCompilation yes
Packaged 2020-03-05 18:24:20 UTC; therneau
Repository CRAN
Date/Publication 2020-03-07 12:10:03 UTC

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