sybilcycleFreeFlux (version 2.0.2)

getModel_WW: based on the algorithm given in Wright & Wagner 2008

Description

get a model that contains only reactions in loops.

Usage

getModel_WW(model, solver = SYBIL_SETTINGS("SOLVER"))

Arguments

model

An object of class modelorg.

solver

Single character value. The solver to use. See SYBIL_SETTINGS for possible values. Default: SYBIL_SETTINGS("SOLVER").

Value

return an object of class modelorg containing subset of reactions of the original model that participate in at least one loop.

References

Wright, J. and Wagner, A. (2008). Exhaustive identification of steady state cycles in large stoichiometric networks. BMC systems biology, 2, 61.

See Also

modelorg cfFBA

Examples

# NOT RUN {
##---- Should be DIRECTLY executable !! ----
##-- ==>  Define data, use random,
##--	or do  help(data=index)  for the standard data sets.
# }
# NOT RUN {
 data(iAF1260)
 loopiAF=getModel_WW(iAF1260)
 
# }
# NOT RUN {
 
# }