iAF1260

The dataset is a genome scale metabolic network of the E. coli. It consists of 2077 internal reactions, 304 exchange
 reactions and a biomass objective function.

datasets

Implement cycle-Free flux balance analysis (CycleFreeFlux), cycle-free flux variability, and Random Sampling of solution space.
Desouki, A. A., Jarre, F., Gelius-Dietrich, G., & Lercher, M. J. (2015). CycleFreeFlux: efficient removal of thermodynamically
infeasible loops from flux distributions. Bioinformatics, 31(13), 2159-2165. <doi:10.1093/bioinformatics/btv096>.
Flux balance analysis is a technique to find fluxes in metabolic models at steady state.
It is described in Orth, J.D., Thiele, I. and Palsson, B.O. What is flux balance analysis? Nat. Biotech. 28, 245-248 (2010).

Abdelmoneim Amer Desouki

sybilcycleFreeFlux

Cycle-Free Flux Balance Analysis (CycleFreeFlux)

iAF1260 function

An object of class <code>modelorg</code>

iAF1260: Escherichia coli Metabolic Model iAF1260

Description

Usage

Arguments

Format

References