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tapnet (version 0.3)

Trait Matching and Abundance for Predicting Bipartite Networks

Description

Functions to produce, fit and predict from bipartite networks with abundance, trait and phylogenetic information. Its methods are described in detail in Benadi, G., Dormann, C.F., Fruend, J., Stephan, R. & Vazquez, D.P. (2021) Quantitative prediction of interactions in bipartite networks based on traits, abundances, and phylogeny. The American Naturalist, in press.

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Install

install.packages('tapnet')

Monthly Downloads

173

Version

0.3

License

GPL

Issues

0

Pull Requests

0

Stars

1

Forks

1

Maintainer

Carsten F Dormann

Last Published

January 28th, 2021

Functions in tapnet (0.3)

simnetfromtap

Simulates a network from parameters, abundances, traits and phylogeny provided
simulate_tapnet

Creates a simulated along with all parameters, abundances, traits and phylogeny used
tapnet2df

Convert tapnet object into data.frame
tapnet-package

tapnet: A package for fitting, and predicting from, bipartite interaction networks.
gof_tapnet

Goodness-of-fit of a tapnet fit
internalFunctions

Helper functions for tapnet
Tinoco

Hummingbird-flower networks
fit_tapnet

Fit the tapnet model to a network
make_tapnet

Constructs an object of type "tapnet"
predict_tapnet

Predict from fitted tapnet to new data