Parse taxon names using the GBIF name parser.
Retrieve the taxonomic hierarchy from given EOL taxonID.
Get possible credibility ratings
Get coverge from tsn
Returns a list of the pulications used for the TSN.
Get the TSN code for a search term.
getglobalspeciescompletenessfromtsn
Get global species completeness from tsn
Retrieve gene sequences available for a species from NCBI.
searchbycommonnamebeginswith
Search for tsn by common name beginning with
Retrieve the taxonomic hierarchy for a given taxon ID.
Get date data from tsn
Returns a list of the other sources used for the TSN.
Function to collapse a double phylogenetic tree root
gettaxonauthorshipfromtsn
Returns the author information for the TSN.
Search for terms in EOL database.
Lookup-table for APGIII family names
Search Catalogue of Life for taxonomic IDs
Retrieve nucleotide sequences from NCBI.
Returns the scientific name for the TSN. Also returns the component parts
(names and indicators) of the scientific name.
Get all possible geographic values
Get full record from TSN.
Returns the usage information for the TSN.
getcredibilityratingfromtsn
Get credibility rating from tsn
Get comment detail from TSN
Function to parse xml data, decode strings, and return NULL if logical is zero.
getgeographicdivisionsfromtsn
Get geographic divisions from tsn
Provides a list of the unique languages used in the vernacular table.
Print a message if verbose is TRUE, but don't if FALSE
Retrieve all taxa names or TSNs downstream in hierarchy from given TSN.
getunacceptabilityreasonfromtsn
Returns the unacceptability reason, if any, for the TSN.
Aggregate data by given taxonomic rank
Get all possible kingdom names
Get description of the ITIS service
getjurisdictionaloriginfromtsn
Get jurisdictional origin from tsn
Get any match count.
Check invasive species status for a set of species from GISD database
Searches common name and acts as thin wrapper around searchbycommonnamebeginswith
and searchbycommonnameendswith
Get hierarchies from TSN values, full, upstream only, or immediate downstream
only
Get the NameID codes from Tropicos for taxonomic names.
Returns a list of the synonyms (if any) for the TSN.
Use Catalogue of Life to get downstream taxa to a given taxonomic level.
Retrieve gene sequences from NCBI by accession number.
getitistermsfromcommonname
Get itis terms from common names
Extractor functions for iucn
-class.
Get kingdom names.
Get the UID codes from NCBI for taxonomic names.
Get The Plant List families.
Get possible jurisdiction values
Gets the unique LSID for the TSN, or an empty result if there is no match.
Get accepted names from tsn
Vector of 793 genus names of plants
Get family names to make Phylomatic input object, and output input string
to Phylomatic for use in the function phylomatic_tree.
Search for pages in EOL database using a taxonconceptID.
Resolve names using Global Names Resolver.
Search for taxonomy data from Plantminer.com
Get references related to a ITIS TSN.
Get The Plant List csv files.
Function to to do things
Search for presence of taxonomic names in EOL invasive species databases.
Gets the TSN corresponding to the LSID, or an empty result if there is no match.
Returns the full ITIS record for the TSN in the LSID, found by comparing the
TSN in the search key to the TSN field. Returns an empty result set if
there is no match or the TSN is invalid.
Ping EOL API to see if it's working.
Get hierarchy up from tsn
Get kingdom names from tsn
Get core metadata from tsn
gettsnbyvernacularlanguage
Retrieve accepted TSN (with accepted name)
Gets the partial ITIS record for the TSN in the LSID, found by comparing the
TSN in the search key to the TSN field. Returns an empty result set if
there is no match or the TSN is invalid.
Get the EOL ID from Encyclopedia of Life from taxonomic names.
Lookup-table for IDs of taxonomic ranks
Get the Catalogue of Life ID from taxonomic names.
Search for tsn by common name
Get full ITIS record for one or more ITIS TSN's or lsid's.
Search for any match
Search by scientific name
Parse scientific names using EOL's name parser.
Get kingdom names.
Vector of 1,182 species names of plants
Search the Phylotastic Taxonomic Name Resolution Service.
Get rank for a given taxonomic name.
Capitalize the first letter of a character string.
Search for taxonomic names using the Global Names Index.
Retrieve taxonomic rank name from given TSN.
Search uBio by namebank ID.
Get jurisdiction data, i.e., native or not native in a region.
Get data sources for the Global Names Resolver.
Get common names from scientific names.
Function to get API key.
Function to parse xml data and decode strings
Lookup in the APGII taxonomy and replace family names.
Return all distribution records for for a taxon name with a given id.
Search Catalogue of Life for for direct children of a particular taxon.
Return all reference records for for a taxon name with a given id.
Ping the ITIS API to see if it's working.
Taxnomic search and phylogeny retrieval.
Search uBio by namebank ID.
Get any matching IUCN species names
ubio_classification_search
This function will return all ClassificationBank data pertaining to a
particular ClassificationBankID
Get a summary from the IUCN Red List.
getitistermsfromscientificname
Get itis terms from scientific names
searchbycommonnameendswith
Search for tsn by common name ending with
Return all synonyms for a taxon name with a given id.
getjurisdictionoriginvalues
Get jurisdiction origin values
Provides a list of all the unique rank names contained in the database and
their kingdom and rank ID values.
Get taxonomic names for a given rank.
gettaxonomicranknamefromtsn
Returns the kingdom and rank information for the TSN.
Get ITIS terms, i.e., tsn's, authors, common names, and scientific names.
Get sources for the Phylotastic Taxonomic Name Resolution Service.
Get expert information for the TSN.
Aggregate species data to given taxonomic rank
Return all synonyms for a taxon name with a given id.
Return all accepted names for a taxon name with a given id.
Search Catalogue of Life for taxonomic classifications.
Lookup-table for APGIII order names
Get scientific names from common names.
Retrieve taxonomic identifiers for a given taxon name.
Given the identifier for a data object, return all metadata about the object.
Get full hierarchy from tsn
Get a random vector of species names.
Return summary data a taxon name with a given id.
Get currency from tsn
This function will return all ClassificationBank data pertaining to a
particular ClassificationBankID
Returns the review year for the TSN.
Search for taxonomic name details using the Global Names Index.
Search for any matched page
Get common names from tsn
Format tree string, submit to Phylomatic, get newick or nexml tree.
Retrieve synonyms from various sources given input taxonomic names or identifiers.
Search Tropicos by scientific name, common name, or Tropicos ID.
This function will return NameBankIDs that match given search terms
Get hierarchy down from tsn
Get itis terms from common names
Returns the parent TSN for the entered TSN.
Replacement function for ldply that should be faster in all cases.
Get taxonomic names for a given taxonomic name query.
Provides the date the ITIS database was last updated.
Function to parse xml data and decode strings
Retrieve accepted TSN (with accepted name).
A light wrapper around the taxonstand fxn to call Theplantlist.org database.