taxize (version 0.1.5)

itis_phymat_format: Get family names to make Phylomatic input object, and output input string to Phylomatic for use in the function phylomatic_tree.

Description

Get family names to make Phylomatic input object, and output input string to Phylomatic for use in the function phylomatic_tree.

Usage

itis_phymat_format(taxa = NA, format = "isubmit",
    db = "ncbi")

Arguments

taxa

quoted tsn number (taxonomic serial number)

format

output format, isubmit (you can paste in to the Phylomatic website), or 'rsubmit' to use in fxn phylomatic_tree

db

One of ncbi or itis

Value

• e.g., "pinaceae/pinus/pinus_contorta", in Phylomatic submission format.

Examples

laply(c("Poa annua", "Abies procera", "Helianthus annuus"),
   itis_phymat_format, format='rsubmit')