Retrieve gene sequences from NCBI by accession number.
Search for taxonomic names using the Global Names Index.
Returns a list of the other sources used for the TSN.
gettaxonauthorshipfromtsn
Returns the author information for the TSN.
Get the UID codes from NCBI for taxonomic names.
getjurisdictionaloriginfromtsn
Get jurisdictional origin from tsn
Get the NameID codes from Tropicos for taxonomic names.
Retrieve the taxonomic hierarchy for a given taxon ID.
Get any match count.
Lookup-table for APGIII order names
Get rank for a given taxonomic name.
Gets the partial ITIS record for the TSN in the LSID, found by comparing the
TSN in the search key to the TSN field. Returns an empty result set if
there is no match or the TSN is invalid.
getgeographicdivisionsfromtsn
Get geographic divisions from tsn
Returns a list of the pulications used for the TSN.
Ping EOL API to see if it's working.
getitistermsfromscientificname
Get itis terms from scientific names
Get common names from tsn
Search Catalogue of Life for taxonomic IDs
gettaxonomicranknamefromtsn
Returns the kingdom and rank information for the TSN.
Query Phylomatic for a phylogenetic tree.
Get the EOL ID from Encyclopedia of Life from taxonomic names.
Returns a list of the synonyms (if any) for the TSN.
Search Catalogue of Life for taxonomic classifications.
Search for tsn by common name
Capitalize the first letter of a character string.
getcredibilityratingfromtsn
Get credibility rating from tsn
Get date data from tsn
Get the TSN code for a search term.
Get hierarchy down from tsn
Lookup details for specific names in all taxonomies in GBIF.
Table of APGIII generic names
Get possible jurisdiction values
Search the Phylotastic Taxonomic Name Resolution Service.
Parse scientific names using EOL's name parser.
getunacceptabilityreasonfromtsn
Returns the unacceptability reason, if any, for the TSN.
Get kingdom names from tsn
Given the identifier for a data object, return all metadata about the object.
Retrieve the taxonomic hierarchy from given EOL taxonID.
Function to parse xml data, decode strings, and return NULL if logical is zero.
Returns the full ITIS record for the TSN in the LSID, found by comparing the
TSN in the search key to the TSN field. Returns an empty result set if
there is no match or the TSN is invalid.
Get scientific names from common names.
Search for terms in EOL database.
Get a random vector of species names.
Search for pages in EOL database using a taxonconceptID.
Get full ITIS record for one or more ITIS TSN's or lsid's.
Search for presence of taxonomic names in EOL invasive species databases.
Provides a list of all the unique rank names contained in the database and
their kingdom and rank ID values.
Get possible credibility ratings
gettsnbyvernacularlanguage
Retrieve accepted TSN (with accepted name)
Resolve names using Global Names Resolver.
Get all possible kingdom names
Get expert information for the TSN.
Returns the review year for the TSN.
Search by scientific name
Get all possible geographic values
Get core metadata from tsn
Get the GBIF backbone taxon ID from taxonomic names.
Get a summary from the IUCN Red List.
Retrieve gene sequences from NCBI by taxon name and gene names.
Get accepted names from tsn
Search uBio for taxonomic synonyms by hierarchiesID.
Retrieve gene sequences from NCBI by accession number.
Convert list of classifications to a tree.
Get hierarchy up from tsn
Get full record from TSN.
Lookup-table for APGIII family names
This function will return all ClassificationBank data pertaining to a
particular ClassificationBankID
Gets the TSN corresponding to the LSID, or an empty result if there is no match.
Retrieve all taxa names or TSNs downstream in hierarchy from given TSN.
Lookup-table for IDs of taxonomic ranks
getjurisdictionoriginvalues
Get jurisdiction origin values
Search for gene sequences available for a species from NCBI.
Get sources for the Phylotastic Taxonomic Name Resolution Service.
Get family names to make Phylomatic input object, and output input string
to Phylomatic for use in the function phylomatic_tree.
Function to get API key.
Return all reference records for for a taxon name with a given id.
Return summary data a taxon name with a given id.
getglobalspeciescompletenessfromtsn
Get global species completeness from tsn
getitistermsfromcommonname
Get itis terms from common names
Returns the parent TSN for the entered TSN.
Get ITIS terms, i.e., tsn's, authors, common names, and scientific names.
Get comment detail from TSN
Retrieve gene sequences from NCBI by accession number.
Return all distribution records for for a taxon name with a given id.
Retrieve synonyms from various sources given input taxonomic names or identifiers.
Return all synonyms for a taxon name with a given id.
Retrieve the downstream taxa for a given taxon name or ID.
Get taxonomic names for a given taxonomic name query.
Get data sources for the Global Names Resolver.
Get itis terms from common names
Extractor functions for iucn
-class.
Get coverge from tsn
Vector of 1,182 species names of plants
Taxnomic search and phylogeny retrieval.
Get kingdom names.
Get kingdom names.
searchbycommonnamebeginswith
Search for tsn by common name beginning with
Get currency from tsn
Retrieve taxonomic identifiers for a given taxon name.
Search the CANADENSYS Vascan API.
Returns the scientific name for the TSN. Also returns the component parts
(names and indicators) of the scientific name.
Get jurisdiction data, i.e., native or not native in a region.
Resolve names using Global Names Recognition and Discovery.
Provides a list of the unique languages used in the vernacular table.
Ping the ITIS API to see if it's working.
Search for taxonomic name details using the Global Names Index.
Provides the date the ITIS database was last updated.
Search for any match
Get hierarchies from TSN values, full, upstream only, or immediate downstream
only
Retrieve taxonomic rank name from given TSN.
iplant resolution
Retrieve accepted TSN (with accepted name).
Lookup in the APGII taxonomy and replace family names.
Searches common name and acts as thin wrapper around searchbycommonnamebeginswith
and searchbycommonnameendswith
Resolve names from many different sources
Aggregate species data to given taxonomic rank
Retrieve gene sequences from NCBI by accession number.
Get description of the ITIS service
Return all synonyms for a taxon name with a given id.
Get taxonomic names for a given rank.
Search for names in the International Plant Names Index (IPNI).
Return all distribution records for for a taxon name with a given id.
Get references related to a ITIS TSN.
Deprecated functions in taxize
Search for any matched page
Returns the usage information for the TSN.
Aggregate data by given taxonomic rank
Search Tropicos by scientific name, common name, or Tropicos ID.
Get The Plant List csv files.
Lookup-table for family, genus, and species names for ThePlantList
Check invasive species status for a set of species from GISD database
Return all accepted names for a taxon name with a given id.
Vector of 793 genus names of plants
Search for taxonomy data from Plantminer.com
Return all reference records for for a taxon name with a given id.
Get The Plant List families.
Replacement function for ldply that should be faster in all cases.
Search uBio by namebank ID.
A light wrapper around the taxonstand fxn to call Theplantlist.org database.
Return all accepted names for a taxon name with a given id.
ubio_classification_search
This function will return ClassificationBankIDs (hierarchiesIDs) that refer to the
given NamebankID
Use Catalogue of Life to get downstream taxa to a given taxonomic level.
Search Catalogue of Life for for direct children of a particular taxon.
Get full hierarchy from tsn
Get any matching IUCN species names
Gets the unique LSID for the TSN, or an empty result if there is no match.
Get common names from scientific names.
searchbycommonnameendswith
Search for tsn by common name ending with
This function will return NameBankIDs that match given search terms
Parse taxon names using the GBIF name parser.
Get the Catalogue of Life ID from taxonomic names.