taxize (version 0.3.0)

taxize-deprecated: Deprecated functions in taxize

Description

The following functions are now deprecated - see the function classification

Details

• col_classification: This function is deprecated. Seeclassification
• eol_hierarchy: This function is deprecated. Seeclassification
• tp_classification: This function is deprecated. Seeclassification

The following functions have changed names. The old function names are still available to call, but simply return a message directing the user to the new function name.

• get_seqs: This function has changed name toncbi_getbyname.
• get_genes: This function has changed name toncbi_getbyid.
• get_genes_avail: This function has changed name toncbi_search.
• tp_acceptednames: This function has changed name totp_accnames.
• tp_namedistributions: This function has changed name totp_dist.
• tp_namereferences: This function has changed name totp_refs.
• itis_name: This function has changed name totax_name.

In addition, tpl_search is deprecated - use the Taxonstand functions TPL or TPLck directly.