plot_purity

Plot Affymetrix purity scores against ESTIMATE study purity scores

The 'ESTIMATE' package infers tumor purity from expression data as a
function of immune and stromal infiltrate, but requires writing of intermediate
files, is un-pipeable, and performs poorly when presented with modern datasets
with current gene symbols. 'tidyestimate' a fast, tidy, modern reimagination of
'ESTIMATE' (2013) <doi:10.1038/ncomms3612>.

Kai Aragaki

tidyestimate

A Tidy Implementation of 'ESTIMATE'

plot_purity function

<dl><dt>scores</dt>
<dd>a <code>data.frame</code>, usually one output from <code>estimate_score</code></dd>
<dt>is_affymetrix</dt>
<dd>logical. Are these data from an Affymetrix experiment?
Must be <code>TRUE</code> - this is essentially a verification from the user</dd></dl>

Arguments

Plot Affymetrix purity scores against ESTIMATE study purity scores — plot_purity

<dl>

<dt>scores</dt>
<dd>a <code>data.frame</code>, usually one output from <code>estimate_score</code></dd>


<dt>is_affymetrix</dt>
<dd>logical. Are these data from an Affymetrix experiment?
Must be <code>TRUE</code> - this is essentially a verification from the user</dd>

</dl>

plot_purity: Plot Affymetrix purity scores against ESTIMATE study purity scores

Description

Usage

Value

Arguments

Examples