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tidypmc (version 2.0)

Parse Full Text XML Documents from PubMed Central

Description

Parse XML documents from the Open Access subset of Europe PubMed Central including section paragraphs, tables, captions and references.

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Version

Install

install.packages('tidypmc')

Monthly Downloads

250

Version

2.0

License

GPL-3

Issues

2

Pull Requests

0

Stars

35

Forks

8

Maintainer

Chris Stubben

Last Published

August 27th, 2024

Functions in tidypmc (2.0)

pmc_caption

Split captions into sentences
pmc_metadata

Get article metadata
pmc_xml

Download XML from PubMed Central
pmc_reference

Format references cited
collapse_rows

Collapse a list of PubMed Central tables
path_string

Print a hierarchical path string
pmc_text

Split section paragraphs into sentences
pmc_table

Convert table nodes to tibbles
extract_acronyms

Find acronyms in parentheses
separate_tags

Separate locus tag into multiple rows
separate_refs

Separate references cited into multiple rows
separate_text

Separate all matching text into multiple rows
tidypmc

tidypmc package
repeat_sub

Repeat table subheadings