costMatrix

Numeric vector of length <code>n</code> or matrix with <code>n</code> rows and <code>d</code>
    columns, where <code>n</code> is the number of sample points and <code>d</code>
    the number of replicate measurements (e.g. from multiple arrays).

maxk


  This function calculates the cost matrix for the segmentation model


manip

The package provides functionality that can be
useful for the analysis of high-density tiling microarray data (such
as from Affymetrix genechips) for measuring transcript abundance and
architecture. The main functionalities of the package are: 1. the class
'segmentation' for representing partitionings of a linear series of
data; 2. the function 'segment' for fitting piecewise constant models
using a dynamic programming algorithm that is both fast and exact; 3.
the function 'confint' for calculating confidence intervals using the
strucchange package; 4. the function 'plotAlongChrom' for generating
pretty plots; 5. the function 'normalizeByReference' for probe-sequence
dependent response adjustment from a (set of) reference
hybridizations.

Zhenyu Xu

tilingArray

Transcript mapping with high-density oligonucleotide tiling arrays

costMatrix function

This function calculates the cost matrix for the segmentation model

costMatrix: Segmentation cost matrix

Description

Usage

Arguments

Value

Details

Examples