plotPenLL

In addition to the location of maximmal BIC,
    vertical bars are drawn at these x-positions as well.

extrabar

Get passed on to <code><a rd-options="" href="/link/matplot?package=tilingArray&version=1.50.0" data-mini-rdoc="tilingArray::matplot">matplot</a></code>.

type, pch, lty, lwd, ...


  Plot the log-likelihood and two versions of penalized
  log-likelihoods (AIC, BIC) for a segmentation object.


manip

The package provides functionality that can be
useful for the analysis of high-density tiling microarray data (such
as from Affymetrix genechips) for measuring transcript abundance and
architecture. The main functionalities of the package are: 1. the class
'segmentation' for representing partitionings of a linear series of
data; 2. the function 'segment' for fitting piecewise constant models
using a dynamic programming algorithm that is both fast and exact; 3.
the function 'confint' for calculating confidence intervals using the
strucchange package; 4. the function 'plotAlongChrom' for generating
pretty plots; 5. the function 'normalizeByReference' for probe-sequence
dependent response adjustment from a (set of) reference
hybridizations.

Zhenyu Xu

tilingArray

Transcript mapping with high-density oligonucleotide tiling arrays

plotPenLL function

A <code><linkS4class>segmentation</linkS4class></code> object.

Get passed on to <code><a href="matplot" rd-options="">matplot</a></code>.

Plot the log-likelihood and two versions of penalized
  log-likelihoods (AIC, BIC) for a segmentation object.

plotPenLL: Plot the log-likelihood and penalized log-likelihoods (AIC, BIC)

Description

Usage

Arguments

Value

Details

Examples