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timeSeq (version 1.0.4)

Detecting Differentially Expressed Genes in Time Course RNA-Seq Data

Description

A negative binomial mixed-effects (NBME) model to detect nonparallel differential expression(NPDE) genes and parallel differential expression(PDE) genes in the time course RNA-seq data.

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Version

Install

install.packages('timeSeq')

Monthly Downloads

27

Version

1.0.4

License

GPL (>= 2)

Maintainer

Fan Gao

Last Published

February 9th, 2019

Functions in timeSeq (1.0.4)

timeSeq.sort

Sort NDPE Genes by Kullback Leibler Distance Ratios or P-values
timeSeq

Statistical Inference for Time Course RNA-Seq Data using a Negative Binomial Mixed-Effects Model
timeSeq.heatmap

Heatmap of the Most Significant NDPE Genes
timeSeq_1.0.4-package

Statistical Inference for Time Course RNA-Seq Data using a Negative Binomial Mixed-Effects Model
timeSeq.screeplot

Scree Plot of Kullback Leibler Distance Ratios
pAbp

Example Data in Vignette
simulate.dt

Example Data in Vignette