In this package, we propose a negative binomial mixed-effects (NBME) model to identify differentially expressed (DE) genes, including nonparallel differentially expressed (NPDE) and parallel differentially expressed (PDE) genes, in time course RNA-seq data.
| Package: | timeSeq |
| Type: | Package |
| Version: | 1.0.4 |
| Date: | 2019-2-08 |
| License: | GPL-2 | GPL-3 |
Sun, Xiaoxiao, David Dalpiaz, Di Wu, Jun S. Liu, Wenxuan Zhong, and Ping Ma. "Statistical inference for time course RNA-Seq data using a negative binomial mixed-effect model." BMC Bioinformatics, 17(1):324, 2016.
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