topologyGSA (version 1.4.5)

render.significant.cliques: Graphical display of the significant cliques

Description

This function highlights the significant cliques on the moralized and triangulated graph. Different colors correspond to different values of -log(pvalue)

Usage

render.significant.cliques(info, alpha)

Arguments

info

the result of clique.var.test or clique.mean.test.

alpha

p-value cutoff to define significant cliques

References

Massa, M.S., Chiogna, M., Romualdi, C. (2010). Gene set analysis exploiting the topology of a pathway. BMC Systems Biology, 4:121 http://www.biomedcentral.com/1752-0509/4/121

See Also

clique.var.test, clique.mean.test.

Examples

data(examples)

info <- clique.var.test(y1, y2, dag_bcell, 0.1)
## Not run: render.significant.cliques(info)