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trackViewer (version 1.8.4)
A bioconductor package with minimalist design for drawing elegant tracks or lollipop plot
Description
Visualize mapped reads along with annotation as track layers for NGS dataset such as ChIP-seq, RNA-seq, miRNA-seq, DNA-seq, SNPs and methylation data.
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Version
Version
1.8.4
1.8.3
1.6.0
1.4.0
1.2.0
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Version
1.8.4
License
GPL (>= 2)
Maintainer
Jianhong Ou
Last Published
June 21st, 2016
Functions in trackViewer (1.8.4)
Search functions
dandelion.plot
dandelion.plots
addArrowMark
Add arrow mark to the figure at a given position
geneModelFromTxdb
Prepare gene model from an object of TxDb
addGuideLine
Add guide lines to the tracks
importScore
Reading data from a BED or WIG file
coverageGR
calculate coverage
GRoperator
GRanges operator
importData
Reading data from a BED or WIG file to RleList
getCurTrackViewport
Get current track viewport
importBam
Reading data from a BAM file
lolliplot
Lolliplots
trackList-class
List of tracks
parse2GRanges
parse text into GRanges
trackStyle-class
Class
"trackStyle"
parseWIG
convert WIG format track to BED format track
optimizeStyle
Optimize the style of plot
pos-class
Class
"pos"
plotGRanges
plot GRanges data
trackViewer-package
Minimal designed plotting tool for genomic data
trackViewerStyle-class
Class
"trackViewerStyle"
yaxisStyle-class
Class
"yaxisStyle"
xscale-class
Class
"xscale"
viewTracks
plot the tracks