traseR (version 1.2.0)

GWAS trait-associated SNP enrichment analyses in genomic intervals

Description

traseR performs GWAS trait-associated SNP enrichment analyses in genomic intervals using different hypothesis testing approaches, also provides various functionalities to explore and visualize the results.

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Version

1.2.0

License

GPL

Maintainer

Li Chen

Last Published

February 15th, 2017

Functions in traseR (1.2.0)

Tcell

Peak regions of H3K4me1 in Peripheral blood T cell

traseR

TRait-Associated SNP EnRichment analyses

CEU

Sampled SNPs from all SNPs of CEU population in 1000 genome project

taSNPLD

linkage disequilibrium (>0.8) within 100kb SNPs of all trait-associated SNPs from dbGaP and NHGRI

print.traseR

Print the outcome of taSNP enrichment analyses

taSNP

trait-associated SNPs in dbGaP and NHGRI downloaded from Association Results Browser

querys

Retrieve trait-associated SNPs based

traseR-package

GWAS trait-associated SNP enrichment analyses in genomic intervals

plots

Visualize of trait-associated SNPs