taSNP:
trait-associated SNPs in dbGaP and NHGRI downloaded from Association Results Browser
Description
A GRange object taSNP contains trait-associated SNPs from dbGaP and NHGRI downloaded from Association Results Browser.
Value
The data frame taSNP contains the following columns
- Trait
- Trait
- Trait Class
- Trait class which is formed based on the phenotype tree. Close traits are grouped together to form one class
- SNP_ID
- SNP rs number
- p.value
- GWAS SNP p-value
- seqnames
- Chromosome
- ranges
- Chromosome position
- Context
- SNP functional class
- GENE_NAME
- Nearest gene name
- GENE_START
- Gene start genomic position
- GENE_END
- Gene end genomic position
- GENE_STRAND
- Gene strand