triform (version 1.14.0)

triform-package: Triform finds peaks in ChIP-sequencing data.

Description

The Triform method uses model-free statistics to identify peak-like distributions of sequencing reads, taking advantage of an improved peak definition in combination with known profile characteristics.

Details

Package:

triform

Type:

Package

Version:

1.0

Date:

2012-06-01

License:

GPL-3

It is recommended to make a configuration file in YAML format first. Then run functions "preprocess" and "triform" to find peaks in BED-formatted ChIP-sequencing data.

Examples

## Not run: 
# preprocess("./config.yml")
# triform("./config.yml")
# ## End(Not run)