tspair (version 1.30.0)

plot.tsp: Graphical display of tsp objects

Description

Graphical display of tsp objects

Usage

"plot"(x,y,...)

Arguments

x

A tsp object

y

Not used

...

Plotting arguments, not used

Value

Nothing of interest.

Details

tspplot() creates a plot of each top scoring pair.The figure plots the expression for the first gene in the TSP pair versus the expression for the second gene in the TSP pair across arrays. The user defined groups are plotted in the colors red and blue. The score for the pair is shown across the top of each plot. If there is more than one TSP, hitting return will cycle from one TSP to the next.

References

D. Geman, C. d'Avignon, D. Naiman and R. Winslow, "Classifying gene expression profiles from pairwise mRNA comparisons, Statist. Appl. in Genetics and Molecular Biology, 3, 2004.

See Also

tspcalc, ts.pair, tspsig,predict.tsp, summary.tsp, tspplot

Examples

  ## Not run: 
#   ## Load data
#   data(tspdata) 
#   tsp1 <- tspcalc(dat,grp)
#   plot(tsp1)
#  ## End(Not run)