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tweeDEseq (version 1.18.0)

RNA-seq data analysis using the Poisson-Tweedie family of distributions

Description

Differential expression analysis of RNA-seq using the Poisson-Tweedie family of distributions.

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Version

Version

1.18.0

License

GPL (>= 2)

Maintainer

Juan Gonzalez

Last Published

February 15th, 2017

Functions in tweeDEseq (1.18.0)

tweeDEseq-internal

Internal 'tweeDEseq' functions
normalizeCounts

Count data normalization
gofTest

Test the goodness of fit of every row in a matrix of counts
testShapePT

Test shape parameter of PT
qqchisq

Chi-square quantile-quantile plot
tweeDE

Score test for differences between two Poisson-Tweedie groups
glmPT

Fit Poisson-Tweedie generalized linear model.
mlePoissonTweedie

Maximum likelihood estimation of the Poisson-Tweedie parameters
filterCounts

Count data filtering
seizure

Epileptic seizure counts
tweeDExact

Exact test for differences between two Poisson-Tweedie groups
dPT

The Poisson-Tweedie family of distributions
Methods for objects of class 'mlePT'

Methods for objects of class 'mlePT'
compareCountDist

Compare count data distributions