ungeneanno (version 0.1.6)

getNihSummary: Gather NIH Gene Data

Description

getNihSummary collates data returned from a html request to the NCBI publicly available gene database to populate the gene object. Accessing the NCBI NIH databases is a two stage process; the getNihSummary function carries out the second stage in relation to the NCBI "gene" database, populating NIH specific slots in a gene object.

Usage

getNihSummary(x, y)
"getNihSummary"(x, y)

Arguments

x

gene object

y

query object (see getNihQuery())

Value

gene object a copy of the input object 'x', having the uniprot data added.

Methods (by class)

• gene: gene object a copy of the input object 'x', having the uniprot data added.

Examples

## Not run: 
# f <- query()
# f@gene <- "BRAF"
# db <- "gene"
# f <- getNihQuery(f,db,f@gene)
# gene <- getNihSummary(gene(),f)
# ## End(Not run)