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ungeneanno (version 0.1.6)

Collate Gene Annotation Data from Uniprot and NIH Gene Databases

Description

Taking a list of genes, the package collates together the summary information about those genes from the publicly available resources at Uniprot and NCBI. Additionally, the package is able to collate publication information from a search of the NCBI Pubmed database.

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Version

Install

install.packages('ungeneanno')

Monthly Downloads

3

Version

0.1.6

License

GPL-3

Maintainer

I Richard Thompson

Last Published

September 21st, 2016

Functions in ungeneanno (0.1.6)

Input Vector of Drug/Gene Data

getUniprotSummary

Gather Uniprot Data

Create gene specific objects containing data from online resources

Gather NIH Gene Data

getUniqueGeneList

Create unique list of genes from input list

getGroupGeneList

Create unique list of group,gene combinations from input list

create initial NIH Query

ungeneanno-package

Collate Gene Annotation Data from Uniprot and NIH Gene Databases

produceOutputFiles

Save Gene Information to group Specific Output Files

searchPublications

Carry out Pubmed search for a mtrix

Input Matrix of Drug/Gene Data

Parse files of gene names and group identifiers to create unique lists of each

getPublicationList

Gather NIH Pubmed Data