produceOutputFiles

produceOutputFiles,geneanno,vector,vector,missing-method

produceOutputFiles,geneanno,vector,vector,vector-method

a Vector of group specific vectors relating the list of genes to the groups, as in the input file

Vector of Gene Summary information downloaded from NIH and Uniprot databases, typically output by getGeneSummary

Matrix containing journal article information from the PubMed resource, as retruned by the <code>searchPublications</code> function


<code>produceOutputFiles</code> saves the downloaded gene summary information into group specific files.


Taking a list of genes, the package collates together the summary
information about those genes from the publicly available resources at Uniprot
and NCBI. Additionally, the package is able to collate publication information
from a search of the NCBI Pubmed database.

I Richard Thompson

ungeneanno

Collate Gene Annotation Data from Uniprot and NIH Gene Databases

produceOutputFiles function

<ul>
<li> <code>x = geneanno,dgl = vector,gs = vector,pub = missing</code>: Save object data to text files. </li>
<li> <code>x = geneanno,dgl = vector,gs = vector,pub = vector</code>: Save object data, including journal articles, to text files.
</li>
</ul>

produceOutputFiles: Save Gene Information to group Specific Output Files

Description

Usage

Arguments

Methods (by class)