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varSelRF (version 0.7-3)

Variable selection using random forests

Description

Variable selection from random forests using both backwards variable elimination (for the selection of small sets of non-redundant variables) and selection based on the importance spectrum (somewhat similar to scree plots; for the selection of large, potentially highly-correlated variables). Main applications in high-dimensional data (e.g., microarray data, and other genomics and proteomics applications). You can use rpvm instead of Rmpi if you want but I've only tested with Rmpi.

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Version

Install

install.packages('varSelRF')

Monthly Downloads

506

Version

0.7-3

License

GPL (>= 2)

Maintainer

Ramon Diaz-Uriarte

Last Published

October 28th, 2010

Functions in varSelRF (0.7-3)

plot.varSelRF

Plot a varSelRF object
varSelRF

Variable selection from random forests using OOB error
varSelImpSpecRF

Variable selection using the "importance spectrum"
randomVarImpsRFplot

Plot random random variable importances
plot.varSelRFBoot

plot a varSelRFBoot object
randomVarImpsRF

Variable importances from random forest on permuted class labels
summary.varSelRFBoot

Summary of a varSelRFBoot object
basicClusterInit

Initialize a cluster of workstations
selProbPlot

Selection probability plot for variable importance from random forests
varSelRFBoot

Bootstrap the variable selection procedure in varSelRF