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visit (version 2.2)

Vaccine Phase I Design with Simultaneous Evaluation of Immunogenicity and Toxicity

Description

Phase I clinical trials are the first step in drug development to test a new drug or drug combination on humans. Typical designs of Phase I trials use toxicity as the primary endpoint and aim to find the maximum tolerable dosage. However, these designs are poorly applicable for the development of cancer therapeutic vaccines because the expected safety concerns for these vaccines are not as much as cytotoxic agents. The primary objectives of a cancer therapeutic vaccine phase I trial thus often include determining whether the vaccine shows biologic activity and the minimum dose necessary to achieve a full immune or even clinical response. This package implements a Bayesian Phase I cancer vaccine trial design that allows simultaneous evaluation of safety and immunogenicity outcomes. See Wang et al. (2019) for further details.

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Version

Install

install.packages('visit')

Monthly Downloads

21

Version

2.2

License

GPL (>= 3)

Maintainer

Chenguang Wang

Last Published

August 9th, 2023

Functions in visit (2.2)

vtPriorPar

Get prior distribution parameters
vtSingleTrial

Simulate a single trial
vtTrack

Plot the track plot of dose escalation
vtStan

Call STAN models for MCMC sampling
vtInterim

Conduct interim analysis
vtSimu

Conduct simulation study
vtShiny

Run Web-Based visit application
vtScenario

Set simulation scenario
vtPost

Postetrior sampling for given observed samples
parameters

Parameters
summary2.VTSIMU

Summarize simulation results
visit-package

cancer Vaccine phase I design with Simultaneous evaluation of Immunogenecity and Toxicity
plot.VTTRUEPS

Plot true parameters
plot.VTDEC

Plot decision map
summary.VTTRUEPS

Print true probabilities
summary2

S3 Summary function
summary.VTSIMU

Summarize simulation results
vtDecMap

Obtain decision map information
summary2.VTTRUEPS

Print true probabilities in latex format