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wtest (version 3.0)

The W-Test on Genetic Interactions Testing

Description

Perform the calculation of W-test, diagnostic checking, calculate minor allele frequency (MAF) and odds ratio.

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Version

Install

install.packages('wtest')

Monthly Downloads

175

Version

3.0

License

GPL-2

Maintainer

Rui Sun

Last Published

May 15th, 2018

Functions in wtest (3.0)

SNP_pos

Pseudo position of SNPs for the example data.
wtest.snps.meth

W-test for gene-methylation interaction analysis
phenotype2

A simulated response variable of the genotype-methylation dataset.
mydata

A real type II diabetes genotype dataset.
CpG_pos

Pseudo position of CpG sites for the example data.
maf

Minor allele frequency
hf.snps.meth

Parameters calculation for adjustment of W-test for gene-methylation interaction analysis
phenotype1

A real response variable of the type II diabetes genotype dataset.
wtest.high

W-test for high order interaction analysis
methylation.recode

Recode methylation data
odds.ratio

Odds ratio
methylation

An example methylation dataset.
wtest

W-test
w.qqplot

plots for w p-values diagnosis
hf

Parameters calculation for adjustment of W-test
genotype

An example genotype dataset.
w.diagnosis

Plots for w values diagnosis