Stat ggproto object for creating ggplot layers of binned confidence intervals
for probabiliities of classes in ordinal data
Prediction data frame for nls
Single Ascending Dose Data Set
Objects exported from other packages
Check data for various issues
Sets the default breaks for a time axis
Prediction data frame for polr
Plot data with mean and confidence intervals
Multiple Ascending Dose Noncompartmental Analysis (NCA) dataset
predict.nls
Prediction data frame from ggplot2
Get predictions with standard errors into data frame
Calls the standard theme for xGx graphics
Case 1 PKPD Data Set
Plot data with median and percent intervals
nlmixr Theophylline SD Data Set
Append filenames to bottom of the plot
log10 scales the y axis with a "pretty" set of breaks
Annotate a png file or directory of png files
Create a status (e.g. DRAFT) annotation layer
Reverse-log transform for the x scale.
Pipe operator
xgx_conf_int
returns a dataframe with mean +/- confidence intervals
xgx_scale_y_percentchangelog10
percentchangelog10 transform for the y scale.
Nice labels for log10.
Sets the default breaks for log10
Summarize Covariate information in a dataset
Convert time units for plotting
Calls the standard theme for xGx graphics
Check data for various issues
Append filenames to bottom of the plot
Saving table as an image, also labeling the program that created the table
and where the table is stored
Produce an xgx-styled report the given dataset using xgx R markdown templates,
or a user-provided R markdown template. (Note: The R markdown template provided must
be formatted in a similar manner to that of the xgx R markdown templates to work.)
The working directory will contain a new directory (`xgx_autoexplore_output`) after running this function,
which will contain a directory for the dataset, and futher a directory for the type of analysis / R markdown template.
Sets the standard theme for xGx graphics
Create a new xgx plot
Saving plot, automatically annotating the status and denoting the filenames
log10 scales the x axis with a "pretty" set of breaks
Plot data with median and percent intervals
Wrapper for stat_smooth
Reverselog transform for the y scale.
Sets the default minor_breaks for log10 scales
Plot data with mean and confidence intervals
get_rmd_str
returns a Rmd template string, based on the desired PKPD parameters
Multiple Ascending Dose Data Set (Duplicates Removed)
Edit a Rmd Template from xgx
Determine the name of a Rmd template
Stat object for producing smooths through ordinal data
Multiple Ascending Dose Data Set
Stat ggproto object for binning by quantile for xgx_stat_ci