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xlink (version 1.0.1)

Genetic Association Models for X-Chromosome SNPS on Continuous, Binary and Survival Outcomes

Description

The expression of X-chromosome undergoes three possible biological processes: X-chromosome inactivation (XCI), escape of the X-chromosome inactivation (XCI-E),and skewed X-chromosome inactivation (XCI-S). To analyze the X-linked genetic association for phenotype such as continuous, binary, and time-to-event outcomes with the actual process unknown, we propose a unified approach of maximizing the likelihood or partial likelihood over all of the potential biological processes. The methods are described in Wei Xu, Meiling Hao (2017) . And also see Dongxiao Han, Meiling Hao, Lianqiang Qu, Wei Xu (2019) .

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install.packages('xlink')

Monthly Downloads

16

Version

1.0.1

License

GPL-2

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Maintainer

Yi Zhu

Last Published

August 20th, 2019

Functions in xlink (1.0.1)

xlink

xlink: A package for genetic association models for X-chromosome SNPS on continuous, binary and survival outcomes.
MAF

Select SNP by MAF.
fit_all_models

Model fitting results for each SNP considering as XCI, XCI-E and XCI-S type
fit_XCI_E_model

Model fitting results for each SNP considering as XCI-E type
fit_XCI_model

Model fitting results for each SNP considering as XCI type
xlink_fit

Genetic association models for X-chromosome SNPs on continuous, binary and survival outcomes
infor_table

Information table.
select_output

Selected results table by P value
Rdata

Simulation data for Genetic association models for X-chromosome SNPS